Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium974g00005 ATGGGACCCTGTACGTGTGGCATCTCCCACGGCCAAACCACCTCCTTCTCAATGCCCTTCTCCGGGCCAAACCACAAACCACCCTACCAAGATTCCGACATTTACGATTATTCCTTCACCTCCTCCTCTTCTTCTTCTTCCTCTTCCGTTGACTGCACCCTTTCCCTCGGTACCCCATCCACCCGTTTCTCCCAAGACGACCAAAAACCTACTCGCCACGAACGTAGATCCGTTTCTAACTTCTGTTGGGACTTACTACAATCCAAACACAACCCTCAATCCCAAACCAAGTCCTCCAGAACCTCCAATACCACCTCAAACCCCGACCCTCTCATCGCTCGCCGCTGCGCCAATTGTGATACCACCTCGACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCGCTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAAAGAAGGGCGAGTGCCGCGGCCGCACCGCCGCAGCGGGCTTCTGGCGGCATGATGGAATCGGCGCAGGTGTACAACAACTCGTGGTACGCACACCCGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAGCGAGTTCCGTTTCGCGGATGACGGCGATCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCGCAGACAGAACGAGCCTCGTCCACGACTTCACAAGATGA 699 0.5608 MGPCTCGISHGQTTSFSMPFSGPNHKPPYQDSDIYDYSFTSSSSSSSSSVDCTLSLGTPSTRFSQDDQKPTRHERRSVSNFCWDLLQSKHNPQSQTKSSRTSNTTSNPDPLIARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPQRASGGMMESAQVYNNSWYAHPQSQKMQCFSPGMGSEFRFADDGDRDADNGIPFLSWRLNVADRTSLVHDFTR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium974g00005 232 PANTHER GATA TRANSCRIPTION FACTOR 18 2 232 IPR044272 GO:0003700|GO:0009908
Vium974g00005 232 Gene3D - 112 172 IPR013088 GO:0006355|GO:0008270
Vium974g00005 232 SMART GATA_3 110 162 IPR000679 GO:0006355|GO:0043565
Vium974g00005 232 Pfam GATA zinc finger 116 150 IPR000679 GO:0006355|GO:0043565
Vium974g00005 232 MobiDBLite consensus disorder prediction 89 112 - -
Vium974g00005 232 CDD ZnF_GATA 115 147 IPR000679 GO:0006355|GO:0043565
Vium974g00005 232 ProSitePatterns GATA-type zinc finger domain. 116 141 IPR000679 GO:0006355|GO:0043565
Vium974g00005 232 ProSiteProfiles GATA-type zinc finger domain profile. 110 146 IPR000679 GO:0006355|GO:0043565
Vium974g00005 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium974g00005 Vium-Chr974 74365 76202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium974g00005 15 232 C2C2-Gata Transcription Factor Family AT3G50870 45.693 3.78e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium974g00005 GATA 5.4e-18 CL0167