Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9749g00001 ATGGCTACCCTTTCTTCGTTCAGTTTTGTACCCTTTTGCATGCTCTTGTTCCTTGTTTGTCTCACTAGTCCTGCTTGTGTTTCTTCACTTCAACTTTCCTTGAGAAGGCAAGCTTCAATCCTTGTTTCCATGAAGCAAGATTTTGGAGCTGCTAACTCTTCTCTCAGAAGCTGGGACATGTCAAACTACTTGTCCCTTTGCAGTTGGTATGGCATTCAGTGTGACCATGACAACAGGTCTGTGGTGTCAATTGACATATCAGATTTGAATGTTTCAGGGTCAGTTTCACCTGTCATCACAGGACTCTTGAGCCTTGTGAGTGTGTCACTCCAGGGAAATGGCTTCTCTGGGGAGTTTCCAATTGACATTCACAAGCTACCAAGGCTGAGTTTCCTCAACATGTCTGCAAACGTGTTCAGTGGGAATTTGAGTTGGAAATTCTCCCAGCTAAAGGAGCTCCAAGTGGTGGATGCTTATGACAATGCTTTCAATGGGTCACTTCCTCTGGGTGTCACTGATCTCCCAAAGATCAAGCACTTGAACTTTGGAGGGAACTACTTCTCTGGGGAAATCCCTCCAAGCTATGGAAACATGTGGCAGCTCAAGTATCTGTCCCTTGCAGGGAATGATTTGAGAGGATTCATACCAAGTGAGCTTGGGAATCTCACCAACTTGACTCATCTTTTCTTGGGATACTATAATCAGTTTGATGGTGGAATCCCTCCAGAGTTTGGTAAGCTCACCAATTTGGTTCATCTAGACATTGCAAACTGTAGCTTGACAGGTCCGATTCCTGTTGAGTTGGGAAACCTGAAGAAGTTAGACACTCTCTTCTTGCAAACAAATCAGCTGAGTGGTTCGATCCCTCCCCAGCTGGGAAACTTGACTGGATTAAAAGCTCTTGATCTATCATTCAACATGCTCACAGGAGGCATCCCTGATGAGTTCTCAGCCCTTCAAGAGCTTACCCTCTTGAACTTGTTCATAAACAAGCTGCATGGAGAAATTCCTCACTTCATTTCTGAGCTACCAAACTTGGAGACTCTCAAGCTTTGGCAGAACAACTTCACTGGAGTGATTCCTTCTAATCTTGGCCAGAATGGCTGGTTGGTTGAGCTTGATTTGTCAACAAATAAGCTCACTGGTTTGGTGCCAAAATCTCTGTGCCTTGGAAAGAGGCTGAAAATTTTGATCCTGCTCAAGAACTTTCTGTTTGGATCTTTGCCTGAGGATCTTGGTCAATGCCACACACTCCAAAGAGTCCGTTTGGGTCAGAACTACTTAACCGGGCCATTGCCACATGGGTTTCTCTATTTGCCTGAACTTTTACTTGTGGAGCTTCAGAACAATTATCTTAGTGGTGGCTTACCACAATCAACAAGCAGCACACCCTCCAAACTAGCACAGTTGAACCTATCTAACAACCGCTTCTCAGGGTTTCTTCCAGCCTCAATTTCAAATTTTCCAAACTTGCAAATTCTTCTGCTTAGTGAAAACAGACTCTGTGGAGAAATTCCACCAGTTATAGGGAGTTTGAAAAGCATCCTCAAGTTTGATATAAGTGTCAACAACTTTTCAGGTACTATTCCACCCGAGCTAGGTAATTGTGTCTTACTCACCTATTTAGATTTCAGCCAAAACCAGCTATCAGGTCCCATTCCTGTTCAAATTGCTCAAATCCACATATTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCCAAGGAACTTAGGACCATGAAGGGCTTAACTACAGCAGATTTCTCTCACAACAACTTCTCAGGTTCAATACCGGAGGGGGGGCAATTCTCAATCTTTAATTCTACATCCTTTGTGGGTAATCCTCATCTATGTGGTTATGACTCCAAGCCATGCAACCTTTCTTCAACATCTACTCTGGAGTCTCAAGAAAAAAAGAGTGCAAAACATGGGGTGCCTGGGAAGTTCAAGTTCCTTTTTGCATTGGCATTGTTGGGGTGCTCATTGGTGTTTGTAACCTTGGCCATAATCAAAAGTAGAAAGACTAGGAGGCACTCCAATTCATGGAAGTTAACAGCATTCCAGAAGCTGGAGTATGGGAGTGAGGACATCATAAGTTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGATCTGGGGTTGTGTACAGAGGAACCATGCCAAATGGAGAGGAAGTGGCAGTGAAGAAGCTCTTAGGAATCAACAAAGGATCTTCTCATGACAATGGCCTCTCTGCAGAGATAAGAACATTAGGGAGAATCAGACATAGGTACATTGTGAGGTTGTTAGCATTTTGCTCAAACAGAGAGACCAATTTGCTTGTCTATGATTACATGCCAAATGGAAGCTTGGGGGAAGTGTTGCATGGGAAAAGAGGTGAGTTTCTCAAGTGGGACACTAGGCTCAAAATAGCTATAGAAGCTGCAAAAGGACTTTGTTATCTGCACCATGATTGTTCCCCTTTGATAATCCATAGAGATGTCAAGTCAAACAACATACTCCTCAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATAATGGTGCATCAGAGTGCATGTCTTCCATTGCTGGTTCCTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTACAGCTTTGGAGTGGTGCTGCTAGAGCTCATAACAGGGAGAAGACCAGTGGGAAACTTTGGGGAAGATGGATTAGACATTGTTCAATGGATCATGATGCAAACAAATGGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTACATCACATTCCTTTGACTGAAGCAAAGCAGGTGTTTTTTGTGGCAAAGTTGTGTGTTCATGAACACAGTGTGGAAAGACCAACCATGAGAGAAGTGGTTGAAATGCTTGCACAAGCAAAACAACCAAATACATTTCAGATGCAGTGA 2970 0.4327 MATLSSFSFVPFCMLLFLVCLTSPACVSSLQLSLRRQASILVSMKQDFGAANSSLRSWDMSNYLSLCSWYGIQCDHDNRSVVSIDISDLNVSGSVSPVITGLLSLVSVSLQGNGFSGEFPIDIHKLPRLSFLNMSANVFSGNLSWKFSQLKELQVVDAYDNAFNGSLPLGVTDLPKIKHLNFGGNYFSGEIPPSYGNMWQLKYLSLAGNDLRGFIPSELGNLTNLTHLFLGYYNQFDGGIPPEFGKLTNLVHLDIANCSLTGPIPVELGNLKKLDTLFLQTNQLSGSIPPQLGNLTGLKALDLSFNMLTGGIPDEFSALQELTLLNLFINKLHGEIPHFISELPNLETLKLWQNNFTGVIPSNLGQNGWLVELDLSTNKLTGLVPKSLCLGKRLKILILLKNFLFGSLPEDLGQCHTLQRVRLGQNYLTGPLPHGFLYLPELLLVELQNNYLSGGLPQSTSSTPSKLAQLNLSNNRFSGFLPASISNFPNLQILLLSENRLCGEIPPVIGSLKSILKFDISVNNFSGTIPPELGNCVLLTYLDFSQNQLSGPIPVQIAQIHILNYLNVSWNHLNQSLPKELRTMKGLTTADFSHNNFSGSIPEGGQFSIFNSTSFVGNPHLCGYDSKPCNLSSTSTLESQEKKSAKHGVPGKFKFLFALALLGCSLVFVTLAIIKSRKTRRHSNSWKLTAFQKLEYGSEDIISCIKESNVIGRGGSGVVYRGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGNFGEDGLDIVQWIMMQTNGNKEMVMKILDERLHHIPLTEAKQVFFVAKLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQ 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9749g00001 989 Gene3D Ribonuclease Inhibitor 339 636 IPR032675 -
Vium9749g00001 989 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515
Vium9749g00001 989 Pfam Leucine Rich Repeat 467 488 IPR001611 GO:0005515
Vium9749g00001 989 SUPERFAMILY Protein kinase-like (PK-like) 699 977 IPR011009 -
Vium9749g00001 989 ProSiteProfiles Protein kinase domain profile. 705 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9749g00001 989 Gene3D Phosphorylase Kinase; domain 1 672 782 - -
Vium9749g00001 989 ProSitePatterns Protein kinases ATP-binding region signature. 711 734 IPR017441 GO:0005524
Vium9749g00001 989 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vium9749g00001 989 Gene3D Transferase(Phosphotransferase) domain 1 783 989 - -
Vium9749g00001 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 979 - -
Vium9749g00001 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 989 - -
Vium9749g00001 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 674 782 - -
Vium9749g00001 989 Gene3D Ribonuclease Inhibitor 232 338 IPR032675 -
Vium9749g00001 989 SUPERFAMILY RNI-like 83 429 - -
Vium9749g00001 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Vium9749g00001 989 SMART LRR_typ_2 343 367 IPR003591 -
Vium9749g00001 989 SMART LRR_typ_2 488 512 IPR003591 -
Vium9749g00001 989 SMART LRR_typ_2 271 295 IPR003591 -
Vium9749g00001 989 Gene3D Ribonuclease Inhibitor 32 231 IPR032675 -
Vium9749g00001 989 FunFam Uncharacterized protein 34 191 - -
Vium9749g00001 989 SMART serkin_6 705 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9749g00001 989 SUPERFAMILY L domain-like 370 627 - -
Vium9749g00001 989 FunFam Receptor-like protein kinase 2 192 290 - -
Vium9749g00001 989 Pfam Protein tyrosine and serine/threonine kinase 707 977 IPR001245 GO:0004672|GO:0006468
Vium9749g00001 989 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9749g00001 Vium-Chr9749 4440 9031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9749g00001 41 979 Receptor kinase-like Gene Family AT5G65700 56.977 0.0 1069
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium9749g00001 PK_Tyr_Ser-Thr 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9749g00001 - - gmx:100803075 1765.74