Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium973g00001 ATGTCATCCAACAGTTCTTTGAAAGGGGAATTGACAAAGAAGACTCCATTTTTGGGGTTGAGACGATGGGTTTTGATTGGAGTAGGTGTTGGTGCATTTATAGTGCTTATTCTTTGTATATTGTCAATATGGGTGATGTTTCGGAGAAAGTCTAAGAGATCTTTGGACAAGTATTCTGTATCCCAAATACCAAATGTCTCAAAAGATATCGACGTTGACAAGGTTGGAGTGCAGAGTTCTCATGTCCAACCAGAAAATGTGCTTATGCCTGTTCATAACATGACAAGTGATAAAAATTCAGATAATATATCAGTTCATTTGGGTAACAGCAAATCTGGGGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGCTGAAGAAGGAAGCTCTGGGAATGTTAAGAAACAATCCACATTGTCACATGGAGGGTTGGCTACTGCCTCTCCATTAGTTGGCTTGCCTGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTCAGAGATCTGGAAATGGCAACCAAACGATTCTCAGCTGAGAACATTATTGGTGAGGGTGGATATGGGGTTGTTTACAAGGGAATACTGATTAATGGAATTGAGGTGGCAGTGAAGAAACTTCTTAACAACTTGGGACAGGCTGAGAAAGAATTCAGAGTTGAAGTGGAGGCTATAGGACATGTTAGACATAAGCATCTCGTACGCCTTCTCGGATATTGTGTAGAGGGAGTTCATAGGCTGCTTGTGTATGAATATGTGAACAATGGTAACTTAGAACAGTGGTTACATGGAGACATGCACCAACATGGGACACTTACTTGGGAGGCCCGCTTGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAGGTTATTCATCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAATTCAATGCAAAGGTTTCTGATTTTGGCATGGCCAAACTTTTGGATTCGGGAGAAAGTTACATAACCACAAGAGTAATGGGAACGTTTGGTTATGTGGCCCCAGAATACGCGAACAGTGGTTTGTTAAAAGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGACCCTGTAGACTATGCTCGTCCTGCCAATGAGGTTAATCTAGTTGAATGGCTCAAAATGATGGTAGGAACAAGAAGGGCTGAAGAAGTAGTGGACTCAAACCTTGAAGTTAAACCACCTTTGCGTGCTTTGAAGCGCACTCTTCTGGTTGCACTTAGATGTATTGATCCTGATGCTGACAAGAGGCCCAAAATGAGTCAAGTTGTGAGAATGCTCGAAGCTGATGAATATCCATACCGAGAGGATAGAAGAAACAGAAAGAGTGGCACTGTCAACATGGAAATTGAAACTGTGAAGGATATTTCGGGTCCATCTGATGCTGAAAGGATGGGGCATACTGAAACAACTCAAGGATAG 1518 0.419 MSSNSSLKGELTKKTPFLGLRRWVLIGVGVGAFIVLILCILSIWVMFRRKSKRSLDKYSVSQIPNVSKDIDVDKVGVQSSHVQPENVLMPVHNMTSDKNSDNISVHLGNSKSGDPDNISQCSSIYHHERGFSSMSAEEGSSGNVKKQSTLSHGGLATASPLVGLPEFSHLGWGHWFTLRDLEMATKRFSAENIIGEGGYGVVYKGILINGIEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDMHQHGTLTWEARLKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGMAKLLDSGESYITTRVMGTFGYVAPEYANSGLLKEKSDIYSFGVLLLEAVTGRDPVDYARPANEVNLVEWLKMMVGTRRAEEVVDSNLEVKPPLRALKRTLLVALRCIDPDADKRPKMSQVVRMLEADEYPYREDRRNRKSGTVNMEIETVKDISGPSDAERMGHTETTQG 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium973g00001 505 MobiDBLite consensus disorder prediction 99 119 - -
Vium973g00001 505 CDD STKc_IRAK 194 460 - -
Vium973g00001 505 FunFam Putative receptor-like protein kinase 170 263 - -
Vium973g00001 505 MobiDBLite consensus disorder prediction 467 505 - -
Vium973g00001 505 PANTHER OS01G0323000 PROTEIN 1 478 - -
Vium973g00001 505 Coils Coil 208 228 - -
Vium973g00001 505 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium973g00001 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Vium973g00001 505 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Vium973g00001 505 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Vium973g00001 505 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium973g00001 505 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium973g00001 505 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Vium973g00001 505 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Vium973g00001 505 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium973g00001 Vium-Chr973 592 5357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium973g00001 19 462 Trihelix Transcription Factor Family AT1G70460 39.866 3.19e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium973g00001 Pkinase 4.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium973g00001 - - gmx:100798916 933.71