Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9730g00014 ATGGGTGGGGGTGACGCCTTTGTGTCTCAACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCACCTTTTTCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTCAGTCCGAGCATCCTTCTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCCGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTAGAGAGCCCGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTACAGCAACTCTTCCACCTGCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTCTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGCGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTTCCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTACTCCCCGAATTCTCTGTGGGCAACTCGTGTTCTCCCTATGTTCTTGTCCTTGAATCTGGGAGTGAGAGTTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGTCGTGGGAAGGTCTAGTTCGGTTATGACTTCAAATTCCCGTCTTGGATGCCATGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGAAGCTCCTGATCCAACAGTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGAAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGAAGGGAGTAGTACTACCAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCGTATGTTATGGACGAAAGTTCCTCACTCCAAGTGCCCATACGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGTCTTTGATGCAACTATAGTTGAGGATGATGCTGCTAGTGGTGGGGCTGCAACTGAAAGGACAACTTGTAATGGGAATAGTGCTGCAATTGGAAGAAATAGAAAGGAAAGTTTTTCCATATCAAAGATTTGGCTCAGGGGGAAGAAGGATAAGCCAAATGCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCATTTCGTTTTCCGGCTAAGTCCAGTGTTGTCGCTGCTTCGGTCAGTGCTGATGATGATTTGAAAGGAAGAAATCCTAAGTTTGATACAAGGAGTACCATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGAAGCGAGTTCGATTTCGATGAGGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCTCAGGAGGAAGACAGAACAAGGTTGTTCACTCAGCTTCCAACCTCTAA 1521 0.4602 MGGGDAFVSQPEQPPYFLSQPNSPFSPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSVGNSCSPYVLVLESGSESSREIVPEREAVVGRSSSVMTSNSRLGCHGDSEFGSTRVDLKSGELLSEAPDPTVPNGVEKVVTVKLGKFKSVDGGGDGGEGSSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAVFDATIVEDDAASGGAATERTTCNGNSAAIGRNRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSVVAASVSADDDLKGRNPKFDTRSTISEMDIGKWENGGGSEFDFDEENQSCYSMDSSQARAPSFARRTLLWLSGGRQNKVVHSASNL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9730g00014 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Vium9730g00014 506 MobiDBLite consensus disorder prediction 312 335 - -
Vium9730g00014 506 FunFam RING-H2 finger protein ATL46 90 175 - -
Vium9730g00014 506 CDD RING-H2_EL5-like 127 170 - -
Vium9730g00014 506 Pfam Ring finger domain 127 170 IPR001841 -
Vium9730g00014 506 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vium9730g00014 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 392 - -
Vium9730g00014 506 SMART ring_2 128 169 IPR001841 -
Vium9730g00014 506 MobiDBLite consensus disorder prediction 1 24 - -
Vium9730g00014 506 SUPERFAMILY RING/U-box 107 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9730g00014 Vium-Chr9730 193883 196122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9730g00014 35 506 C3H Transcription Factor Family AT2G18650 45.603 1.91e-101 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9730g00014 - - gmx:100797283 852.432