Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9730g00013 ATGCCTCATCCCACGCACCACCCCCAACCCCAACCCCAACCAAAACCTAATCCCAACCTTCTCTCTCTCTTCCTCAAACCCATCATTATGCTTCTTCTCACCTCCCTTTTCTTCCTCTTCATTGGCTTCGCCGCCTTTCTCCTCCTCCACCTCTTCCTCCTTGGCGGCGCCTTCCACCGTCTTCGCTTCCGCCCCTCCGCCGCCACTGCCTCCGCTTCCAACGCCCTCCTTCCTCGCGAAATCAACAAGCTACCTCGCTTCCGCCTCTCCCATGGATCCCAAATGCTAGCCGACACCCACTGCGTTGTCTGTTTAGACGCCTTTCGCAGCGGCCAGTGGTGCCGGAAACTCGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACGTGCCGTACATCCGTGCGATTTAATGCCGGGCCTCCAGTACAAGACTCAGCACTAGGTTCTACTTTTGCCCAGTTTCGAGCCTGCGAAACTGACTCCAATGCTGTCACCCTTTTATAG 540 0.5796 MPHPTHHPQPQPQPKPNPNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLHLFLLGGAFHRLRFRPSAATASASNALLPREINKLPRFRLSHGSQMLADTHCVVCLDAFRSGQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTSVRFNAGPPVQDSALGSTFAQFRACETDSNAVTLL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9730g00013 179 SMART ring_2 101 142 IPR001841 -
Vium9730g00013 179 Pfam Ring finger domain 100 143 IPR001841 -
Vium9730g00013 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 150 IPR013083 -
Vium9730g00013 179 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vium9730g00013 179 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 155 - -
Vium9730g00013 179 SUPERFAMILY RING/U-box 92 149 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9730g00013 15 172 C3H Transcription Factor Family AT2G18670 44.654 4.43e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9730g00013 - - var:108321550 254.218