Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9730g00011 ATGCTGTCAAGATCTTGCTTGGGGCTGTTAAATTTGGTATCGGTGGATGATTACCAAGCGCTGGCTCGGGTTCCGCGGGTGGTGACCACGGTTGCTGGAGACGTGGCGGAGTTGGACATGAACGGCATGGAGAATTCTGGATTGGACGAGGTAGTTTCGCCGGTGCCGCGCGAGAGGCGGGTCGTGGTGGCGAATCAGTTACCGATACGCGCATTTCGTGAGGGGAAGAAATGGAGGTTCGAGTGGGACAGAGACAGCCTGGTCCTTCAGCTTAAAGATGGGTTCCCTTCGGATGTGGAAGTGTTGTACGTTGGTTCATTGAAAGCAGAGATCGAAGCGAGCGAACAAGAAGAAGTGGCTCAGTTGCTCCTCGAAAGGTTCCGCTGCGTCCCAACGTTTATACCCCCAGAGGTTCACAACAAATTCTACCATGGTTTCTGCAAGCATTACCTGTGGCCTCTCTTCCACTACATGCTACCCATGTCGCCGAGTCAGGGCGCGCACTTCGACCGCGACCAGTGGAAGGCCTACGTCCTGGCCAACAAGATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCAGACGAGGATTATGTCTGGGTCCACGATTACCACCTCATGATCCTCCCCACTTTTCTCCGGAAGCGGTTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCGTCCTCGGAGATATACAGGACTTTGCCGGTGCGCGAGGACATTCTCCGGGCGTTTCTCAACTGCGATTTGGTCGGCTTCCACACCTTCGACTACGCGCGGCATTTTTTGTCGTGTTGCAGCAGAATGTTGGGGCTGGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTATGGTAGGACCGTGACGATTAAGATCCTCCCCGCGGGGATCCACATGGGCCTCTTGGAGTCGGTGTTGTCGTTGCCGCAGACCGCAAAAAGGGTGAAAGAATTGAAGAAGGAGTACGAGGGGAAGGTTGTGATATTGGGGGTGGATGACATGGACTTGTTCAAGGGGATTAGTTTGAAGTTCCTGGCTTTGGGGAAGCTTTTGGAAGTGGACGAAGGATTGCGGGGTCGTGTTGTGTTGGTTCAGATTCTGAACGCTGCCAGGAGCAGAGGGAAGGATATTCAGGACGTGAAGAGCGAGAGCGAGGCTATTGCGAGGGATATCAATGAGAAGTATTCGCAACCGGGGTACAAGCCTATTGTTTTTGTGAATGGACCAATTTCCACGCAGGAGAAGGCAGCGTATTACTCCATTGCCGAGTGTTGCGTCGTGAATGCTGTGAGGGATGGGATGAATTTGGTGCCTTACGAGTACACTGTGTGTAGGCAGGGGACTGTTGCTTTGGATAAAGCTCTTGGGGTTGAAGGCGAGGATAAAAAATCCCTTAAACAGAGCGTTATAATTGTGTCTGAGTTCATAGGGTGTTCCCCTTCTCTCAGTGGAGCCATCAGGGTTAATCCGTGGAACATTGATGAAGTCGCTGAGGCAATGAATTCAGCTGTAACAATGTCGGAGGCAGAGAAGCATTTGCGCCATGAGAAGCATTACAAGTACATTAGCTCTCATGACGTGGCTTACTGGGCAAGGAGTTTTGATCAAGATTTAGATAGAGCATGTAGGGAGCATTATTCCAAGAGGTACTGGGGTGTTGGGTTCGGATTGGGGTTTAGAATTGTTGCTCTGGATCCTACCTTTAGGAAGCTCTCTGTAGATCACATTGCCTCTGCGTATAGAGGTACACACAGTCGGTTGATCCTTTTGGACTACGATGGCACCATGATGCCACAGGCCTCAATAAACAAGACTCCAAGCGTGGAAGTTATTTCTGTCTTGAATTACTTATGCAGTGACCCCGAAAATATGGTGTTCATTGTGAGCGGCAGGGATAAGGATTGCTTGAGCAAATGGTTTTCTCCCTGTGAGAAATTGGGTCTCTCTGCTGAGCACGGTTACTTCACTAGGTGGAGTATGAATTCTCCTTGGGAGACTTGCGGATTGGCAATCGATTGTGAATGGAAAATGATTGCAGAACCTGTGATGGCGCTTTATACAGAAGCAACGGATGGTTCCTTCATTGAACACAAGGAAAGCGCAATGGTGTGGCATCATCAAGAAGCAGATCCTTATTTTGGATCATGCCAAGCAAAAGAGCTTCTTGATCACTTGGAGAGTGTGCTGGCCAATGAGTCAGTGGTGGTTACAAGGGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAGGGTAAAGTGGTGGAAGACATTATTTCAACCATGAGAAGTAAGGGAAAGTCACCTGATTTTCTATTATGCATAGGAGATGATCGCTCAGATGAAGATATGTTCGAAAGTATTGCTCGTTCAGTGTCTAATCCAGCTCTGCCAACCATAGCCAAAGTGTTTGCATGCACTGTTGGACAAAAACCAAGTATGGCAAAATACTATTTGGATGATACTAACGAAGTAATCAATTTGCTTGAAGGACTTGCGTGCCCATCAACAACATCCTCATCCACAATAACTTCTCAGGCATTGTGA 2568 0.4899 MLSRSCLGLLNLVSVDDYQALARVPRVVTTVAGDVAELDMNGMENSGLDEVVSPVPRERRVVVANQLPIRAFREGKKWRFEWDRDSLVLQLKDGFPSDVEVLYVGSLKAEIEASEQEEVAQLLLERFRCVPTFIPPEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGAHFDRDQWKAYVLANKIFADKVTEVINPDEDYVWVHDYHLMILPTFLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREDILRAFLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPAGIHMGLLESVLSLPQTAKRVKELKKEYEGKVVILGVDDMDLFKGISLKFLALGKLLEVDEGLRGRVVLVQILNAARSRGKDIQDVKSESEAIARDINEKYSQPGYKPIVFVNGPISTQEKAAYYSIAECCVVNAVRDGMNLVPYEYTVCRQGTVALDKALGVEGEDKKSLKQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAVTMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGFGLGFRIVALDPTFRKLSVDHIASAYRGTHSRLILLDYDGTMMPQASINKTPSVEVISVLNYLCSDPENMVFIVSGRDKDCLSKWFSPCEKLGLSAEHGYFTRWSMNSPWETCGLAIDCEWKMIAEPVMALYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANESVVVTRGQHIVEVKPQGVSKGKVVEDIISTMRSKGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTIAKVFACTVGQKPSMAKYYLDDTNEVINLLEGLACPSTTSSSTITSQAL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9730g00011 855 Gene3D Glycogen Phosphorylase B; 55 309 - -
Vium9730g00011 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Vium9730g00011 855 Gene3D - 591 702 IPR023214 -
Vium9730g00011 855 Gene3D - 721 852 IPR023214 -
Vium9730g00011 855 Pfam Glycosyltransferase family 20 59 545 IPR001830 GO:0003824|GO:0005992
Vium9730g00011 855 NCBIfam HAD-IIB family hydrolase 593 797 IPR006379 -
Vium9730g00011 855 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 853 - -
Vium9730g00011 855 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 309 - -
Vium9730g00011 855 Gene3D Glycogen Phosphorylase B; 310 529 - -
Vium9730g00011 855 Pfam Trehalose-phosphatase 595 829 IPR003337 GO:0003824|GO:0005992
Vium9730g00011 855 SUPERFAMILY HAD-like 592 840 IPR036412 -
Vium9730g00011 855 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Vium9730g00011 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 549 - -
Vium9730g00011 855 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Vium9730g00011 855 NCBIfam trehalose-phosphatase 591 839 IPR003337 GO:0003824|GO:0005992
Vium9730g00011 855 CDD HAD_TPP 593 834 - -
Vium9730g00011 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 53 840 IPR001830 GO:0003824|GO:0005992
Vium9730g00011 855 FunFam Alpha,alpha-trehalose-phosphate synthase 311 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9730g00011 Vium-Chr9730 147012 150373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9730g00011 10 846 Trehalose Biosynthesis Gene Families AT2G18700 68.090 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9730g00011 K16055 - gmx:100810498 1592.4