Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9730g00001 GGAGATGTGACGATCCTGGCCAACCGTTCGAAGTTTGTAGATTTCACAGTACCATATATTGCATCAGGTGTTAAAATGGTAGTACCAGTTAAACACGGGAGGGATCAAACCATGTGGACTTTTGTTAAACCCTTCAGTTGGGATCTTTGGCTGAGCATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAACGTGAACGCTCTGCCTAATCAAGAGGGTTCTCCAAATCAAAAAAAGCTTTGCCCTGCAACCATCTTGTGGTTTCCATTATCACAAGCCATTCTTCCTGAAAGAGAAGTAGTGGTAAAGAGCTGCTCAAGATTTGTGCTGATGGTTTGGCTTCTACTGGCGTTCGTCCTCATGCAAAGTTACACTGCTAACTTGACTTCTATATTGACCTTAGATCAACTGCGACCCAGTTTTCTGAACCTTAATGATATAAGGAGAAGGGGTTACTACGTTGGATACCAGTCTGAGTCTTTTGTTTACGATGTCTTGATTGACCAATTTAAGTTTGACCCATCCAAACTAAGGCCGTACAGAAACATTGCCGAGTACCATGATGCTCTAGAGCTTGGAAGCCAAAATGGGGGTGTTGCAGCTATATTCGACGAAGTTCCCTACCTTAAAATTTACCTTCAAGAATACGGATCCAATTACGTTATGTCTGGCCCCGAATATAGAAATGCTGGGTTTGGTTTTGTATTCCCGTTAAATTCCAATCTCACGGCTTACTTTTCGACAGCAATCCTGGATGTGATTGAAAGTGGAATAATGAATGAGATTGAGGAAAAATATTTTGGAAAGAATTATATTGGAGGAGAAGTTTCGTCTGGAGAAATATCTTCTGAAACTCTCAGTCTCAGCTTTCATAGCTTCTCTGGGCTTTTCTTTATTTCTGGGATTTCTACTTTGTTAGCGTTATTGGTTTCAGAAAGATTTATTTGGCAAAGGCTCATTTTGATGGCTAAAGCATTGACTGAGATTATGTCCCCAATTCCTCTTTTCAAGAAGAAAACACGTACTCATCCAATTCATGATTCTACTCATGGAACGGAGGCTTAA 1083 0.4063 GDVTILANRSKFVDFTVPYIASGVKMVVPVKHGRDQTMWTFVKPFSWDLWLSIIIISTFIGLAILIMERNVNALPNQEGSPNQKKLCPATILWFPLSQAILPEREVVVKSCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNLNDIRRRGYYVGYQSESFVYDVLIDQFKFDPSKLRPYRNIAEYHDALELGSQNGGVAAIFDEVPYLKIYLQEYGSNYVMSGPEYRNAGFGFVFPLNSNLTAYFSTAILDVIESGIMNEIEEKYFGKNYIGGEVSSGEISSETLSLSFHSFSGLFFISGISTLLALLVSERFIWQRLILMAKALTEIMSPIPLFKKKTRTHPIHDSTHGTEA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9730g00001 360 Pfam Ligand-gated ion channel 276 308 IPR001320 GO:0015276|GO:0016020
Vium9730g00001 360 Pfam Bacterial extracellular solute-binding proteins, family 3 2 275 IPR001638 -
Vium9730g00001 360 Gene3D - 1 38 - -
Vium9730g00001 360 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 324 IPR015683 -
Vium9730g00001 360 Gene3D - 39 175 - -
Vium9730g00001 360 SUPERFAMILY Periplasmic binding protein-like II 1 276 - -
Vium9730g00001 360 SMART GluR_14 53 275 IPR001320 GO:0015276|GO:0016020
Vium9730g00001 360 Gene3D - 218 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9730g00001 Vium-Chr9730 6 1466 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9730g00001 1 334 Ion Channels AT2G29110 39.429 1.96e-66 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9730g00001 K05387 - gmx:100807817 506.523