Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9717g00010 ATGTCCTCCACCACCGCATCCGGCGACGGCACTCCATCCCTCCACTTCGATACGCCGACGCTGGACCGGGAGTTAGCGGCGCTTCTCCACTCCATTTCCGAGCACGGCGGGTACGCGTACGTGAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGCGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCTGGGCCTTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCCACGTGGCTCGACACCACTATGGCAACGGGGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGACGCTCCTTCGCAAGGATTTGGACTCCGCCGTCGCGAAAGTGTCGGAACAAGCTCGAAGGACCGTTAGGGTTTCTGAACTGGGAGACTCGGGACACCGGTTCGTCGATCGGGACTTTAATATGGCAGAGGTGCTCCAACTTTTACCAATTAAGTCTCTTTCTTCTACGCTTGTGGTCAAGAAATCAGCGCTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGAGATTGTATGGCTCACTGGCCAGCCAGCGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGACCGCACAGTTCCGGTTGAGGTTGGAAAAAACTATTTATGTGCTGAATGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCCTGTTCTCTTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTGACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGAGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAATTCGGATGCATCCTAA 1242 0.5056 MSSTTASGDGTPSLHFDTPTLDRELAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVAKVSEQARRTVRVSELGDSGHRFVDRDFNMAEVLQLLPIKSLSSTLVVKKSALSLDKFLKDHYLSRSPVIIRDCMAHWPASAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSGACSLGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDNSDAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9717g00010 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 408 - -
Vium9717g00010 413 Pfam Cupin-like domain 182 406 IPR041667 -
Vium9717g00010 413 Gene3D Cupin 171 405 - -
Vium9717g00010 413 SMART cupin_9 262 412 IPR003347 -
Vium9717g00010 413 SUPERFAMILY Clavaminate synthase-like 177 406 - -
Vium9717g00010 413 FunFam lysine-specific demethylase JMJ30 171 404 - -
Vium9717g00010 413 ProSiteProfiles JmjC domain profile. 271 413 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9717g00010 Vium-Chr9717 92062 96945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9717g00010 182 404 Acyl Lipid Metabolism Gene Families AT3G45880 23.571 4.03e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium9717g00010 Cupin_8 2.5e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9717g00010 K24444 - gmx:100813075 749.199