Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9717g00009 ATGTCCTCCACCACCGCATCCGGCGACGGCACTCCATCCCTCCACTTCGATACGCCGACGCTGGACCGGGAGTTAGCGGCGCTTCTCCACTCCATTTCCGAGCACGGCGGGTACGCGTACGTGAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGCGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCTGGGCCTTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCCACGTGGCTCGACACCACTATGGCAACGGGGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGACGCTCCTTCGCAAGGATTTGGACTCCGCCGTCGCGAAAGTGTCGGAACAAGCTCGAAGGACCGTTAGGGTTTCTGAACTGGGAGACTCGGGACACCGGTTCGTCGATCGGGACTTTAATATGGCAGAGGTGCTCCAACTTTTACCAATTAAGTCTCTTTCTTCTACGCTTGTGGTCAAGAAATCAGCGCTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGAGATTGTATGGCTCACTGGCCAGCCAGCGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGACCGCACAGTTCCGGTTGAGATTTTTTTGTCATGGCAAGGCTGTTGGAAGTTGTTTAGCAGTATACATGAAATTCCTTCAAACACACACAAGGTTGGAAAAAACTATTTATGTGCTGAATGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCCTGTTCTCTTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTGACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGAGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAATTCGGATGCATCCTAA 1314 0.4977 MSSTTASGDGTPSLHFDTPTLDRELAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVAKVSEQARRTVRVSELGDSGHRFVDRDFNMAEVLQLLPIKSLSSTLVVKKSALSLDKFLKDHYLSRSPVIIRDCMAHWPASAKWNDEDYLLRVAGDRTVPVEIFLSWQGCWKLFSSIHEIPSNTHKVGKNYLCAEWKQELITFSEFIQRIKSGACSLGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDNSDAS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9717g00009 437 ProSiteProfiles JmjC domain profile. 295 437 IPR003347 -
Vium9717g00009 437 Gene3D Cupin 171 429 - -
Vium9717g00009 437 Pfam Cupin-like domain 182 430 IPR041667 -
Vium9717g00009 437 SUPERFAMILY Clavaminate synthase-like 177 430 - -
Vium9717g00009 437 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 432 - -
Vium9717g00009 437 SMART cupin_9 286 436 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9717g00009 Vium-Chr9717 92061 96945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9717g00009 182 428 Acyl Lipid Metabolism Gene Families AT3G45880 23.469 7.41e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium9717g00009 Cupin_8 1.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9717g00009 K24444 - gmx:100813075 735.717