Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9707g00010 ATGTCGGAGCCAAAAGACCCGACGATCAAGCTCTTCGGGAAGACGATCCCCTTGTCGGAGATTCCGACTGGATCCGCCGGAGCTCCGGCTTCGTCTTCCGGTGACCTTGTTGATGACAGTGTTGAACACAGCCATGCTTCTTCCTCCAACTCCTCCCTGGAGTCTCATACGCGAGAGGAAGGTGTTGTGGACGAGGACTCACTGGGAGAAAAACCAGCTGATGATAAGAAGGAAGCCCCAACCCAATCATTAGAAGAGGTCAACAATCCAGATACGGTATCTGGAACCTGTGAAGAATCCATTACTGAACCAACTGACAAGGAGACCACTACATTGAAAACCTCGAAAACTGAAGAAGAACTAAGCGAGACAAGTAAGTCACAGGATAAGAACCTCAAAAAACCAGATAAAATACTTCCTTGTCCCCGCTGTAATAGTATGGATACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGTCACTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGGGGGACTATGAGGAATGTTCCTGTAGGTGCTGGTCGCAGGAAGAACAAGAGCTCGTCTTCTCACTATCGCCAGATAACTGTTCCTGATGCTGCCCTCCAGAATCCTCCTCAACTAGACTTGCCAAATGGAGCGTATCATCCTTCCTTGAAATGCAATGGGGCAGTCCTTACATTTGGATCTGATACACCCTTGTGTGAATCAATCGCATCCGTTTTGAACCTTGCTGATAAAACCGTGCACAACTATGCAAGAAATGGATTTTATAAACCTGAAGAACTAAAAGTTCCAGTTCCACATGCCAGTGGAGAAAAAAGAGATGATCAATCCAGTAAATCTTCAGTTACCTCCACAAAGTCAGTGGAAGGTGCAAGCACCAATGGAGCCCAAGAACAAGCTATGCCAAACTGTCATCGTTTCCCACCACAGGTTCCTTACTATACCGGTAACTCTTGGCCTATTCCATGGAATCCAGTGCAGTGGAGTTCTCCAGTACCACCTCCTCCTTTTTGTCCCCCCGGATTCGCCATGCCACTCTATCCTGCTGCAGTATATTGGGGTTGTGCTGTGTCTGGTGCATGGAACATCCCATGGGTAGCACAACCATCCTCACCGAAGGGTGCAACTTCAAATTCTGGCTCTAACTCACCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTGAAATCAAATGAATCTGGTGGTGATGAGGATGGACACAACAAAGAAAACAACAAAGAGAAGTGCCTGTGGGTTCCAAAAACTCTAAGGATTGATGACTCTGGAGAAGCAGAAAAAAGCACTATATGGACAACACTGGGGATTAAAAATGACAAGGCTGACTCAGTTCCTAGGGAAACACTCTTTAAAGGCTTCCCTTCAAAGCTTGATGAGAAAAACCATTCAATCCAAGCCTCACCAGTATTGCAGGCCAATCCTGCAGCGTTGTCAAGGTCACTTAAGTTTCATGAGACCTCATAG 1509 0.4632 MSEPKDPTIKLFGKTIPLSEIPTGSAGAPASSSGDLVDDSVEHSHASSSNSSLESHTREEGVVDEDSLGEKPADDKKEAPTQSLEEVNNPDTVSGTCEESITEPTDKETTTLKTSKTEEELSETSKSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVPDAALQNPPQLDLPNGAYHPSLKCNGAVLTFGSDTPLCESIASVLNLADKTVHNYARNGFYKPEELKVPVPHASGEKRDDQSSKSSVTSTKSVEGASTNGAQEQAMPNCHRFPPQVPYYTGNSWPIPWNPVQWSSPVPPPPFCPPGFAMPLYPAAVYWGCAVSGAWNIPWVAQPSSPKGATSNSGSNSPTLGKHSREDNILKSNESGGDEDGHNKENNKEKCLWVPKTLRIDDSGEAEKSTIWTTLGIKNDKADSVPRETLFKGFPSKLDEKNHSIQASPVLQANPAALSRSLKFHETS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9707g00010 502 MobiDBLite consensus disorder prediction 377 397 - -
Vium9707g00010 502 MobiDBLite consensus disorder prediction 1 138 - -
Vium9707g00010 502 MobiDBLite consensus disorder prediction 288 308 - -
Vium9707g00010 502 MobiDBLite consensus disorder prediction 101 137 - -
Vium9707g00010 502 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vium9707g00010 502 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Vium9707g00010 502 MobiDBLite consensus disorder prediction 83 100 - -
Vium9707g00010 502 PANTHER CYCLIC DOF FACTOR 2 1 502 IPR045174 GO:0003700|GO:0006355
Vium9707g00010 502 MobiDBLite consensus disorder prediction 398 422 - -
Vium9707g00010 502 MobiDBLite consensus disorder prediction 57 82 - -
Vium9707g00010 502 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vium9707g00010 502 MobiDBLite consensus disorder prediction 377 422 - -
Vium9707g00010 502 MobiDBLite consensus disorder prediction 274 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9707g00010 Vium-Chr9707 58211 61973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9707g00010 6 502 C2C2-Dof Transcription Factor Family AT5G39660 44.722 2.77e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium9707g00010 zf-Dof 2.1e-32 No_clan