Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9703g00004 TTCAGGGCACCTCGATGGGCAAGTGTGAACTTAGGAATATTCATTTGCCTGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTACATATATCACAGGTGAGATCCACAACTTTGGATACTTGGTTGCCCGATCAAGTTTCTTTTATGCAATTAATGGGTAATGCGAGGTCAAATAAGCACTGGGAGGCAGAGTTACCTCCAAATTTTGACAGAAATGGATATGGAATCGAGAGATTTATTCGTTCGAAGTATGTGGAGAAAAGATGGGCTTCAAAGGGTGAACTACTACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACCGGAATGAGTCACCAGCTGCTGGGGCCAAGAGTGCTATTCAGAAGAATAGGAGATTGTCTCTTGAGGAAAGCATTTTTGTGAAACATATGAACCATGTTCCGCCTCCGATAAGATCTCCGACACCAGGATCTCAGGAGCTGTCTCCTGATTTGAAAAACAAGCTTTCACCTCTACCAGTAAGGAGGACATCTGCATCATTTGATTTTGACAACTCCAGAATGAAGAACAATGGTTCTGTTGACCATTTTGGCTTGTTTTCCGCCCCTAATGCTAAACAGGAATTCTCAACTACACCTCCTAGCTGGATAACGTTCGATTGTAAGACGGAAATACTTTTATTGCACATTTTTTGTTCAATATCCTGGCACACTTCGTATTGGAACTAA 708 0.4195 FRAPRWASVNLGIFICLQCSGIHRSLGVHISQVRSTTLDTWLPDQVSFMQLMGNARSNKHWEAELPPNFDRNGYGIERFIRSKYVEKRWASKGELLPASKSAEIIFNRNESPAAGAKSAIQKNRRLSLEESIFVKHMNHVPPPIRSPTPGSQELSPDLKNKLSPLPVRRTSASFDFDNSRMKNNGSVDHFGLFSAPNAKQEFSTTPPSWITFDCKTEILLLHIFCSISWHTSYWN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9703g00004 235 Gene3D Arf GTPase activating protein 2 95 IPR038508 -
Vium9703g00004 235 SMART arf_gap_3 1 94 IPR001164 GO:0005096
Vium9703g00004 235 MobiDBLite consensus disorder prediction 139 162 - -
Vium9703g00004 235 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 102 IPR001164 GO:0005096
Vium9703g00004 235 Pfam Putative GTPase activating protein for Arf 3 92 IPR001164 GO:0005096
Vium9703g00004 235 PRINTS HIV Rev interacting protein signature 12 29 IPR001164 GO:0005096
Vium9703g00004 235 PRINTS HIV Rev interacting protein signature 33 54 IPR001164 GO:0005096
Vium9703g00004 235 CDD ArfGap 2 84 - -
Vium9703g00004 235 FunFam stromal membrane-associated protein 1 isoform X1 1 95 - -
Vium9703g00004 235 SUPERFAMILY ArfGap/RecO-like zinc finger 2 91 IPR037278 -
Vium9703g00004 235 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 2 214 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9703g00004 Vium-Chr9703 16889 18566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9703g00004 4 84 C2H2 Transcription Factor Family AT4G05330 51.724 8.20e-22 90.5