Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9703g00002 ATGAATGATGAGCTGAAAACTGAAGGACACTCTTTTGGGCCATTGTTTCCTCCACCCACTTCCCCTTTCTTCCCTCCCTTTTTCCGTTTGCTCTTCCTTCGCTGTGACACATCAACAAACGGTGAAGGTTTTGCAAACATGAGTGCTAAAGCCTCCGTCTCCAAGGAACTCCATGCCAAGCACACAAAGATATTAGAGGCACTTGTCAAGCTACCCGACAACAGGGAATGTGCAGATTGCGGGACAAAGGCACCTCGATGGGCAAGTGTGAACTTAGGAATATTCATTTGCCTGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTACATATATCACAGGTGAGATCCACAACTTTGGATACTTGGTTGCCCGATCAAGTTTCTTTTATGCAATTAATGGGTAATGCGAGGTCAAATAAGCACTGGGAGGCAGAGTTACCTCCAAATTTTGACAGAAATGGATATGGAATCGAGAGATTTATTCGTTCGAAGTATGTGGAGAAAAGATGGGCTTCAAAGGGTGAACTACTACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACCGGAATGAGTCACCAGCTGCTGGGGCCAAGAGTGCTATTCAGAAGAATAGGAGATTGTCTCTTGAGGAAAGCATTTTTGTGAAACATATGAACCATGTTCCGCCTCCGATAAGATCTCCGACACCAGGATCTCAGGAGCTGTCTCCTGATTTGAAAAACAAGCTTTCACCTCTACCAGTAAGGAGGACATCTGCATCATTTGATTTTGACAACTCCAGAATGAAGAACAATGGTTCTGTTGACCATTTTGGCTTGTTTTCCGCCCCTAATGCTAAACAGGAATTCTCAACTACACCTCCTAGCTGGATAACGTTCGATTGTAAGACGGAAATACTTTTATTGCACATTTTTTGTTCAATATCCTGGCACACTTCGTATTGGAACTAA 951 0.4343 MNDELKTEGHSFGPLFPPPTSPFFPPFFRLLFLRCDTSTNGEGFANMSAKASVSKELHAKHTKILEALVKLPDNRECADCGTKAPRWASVNLGIFICLQCSGIHRSLGVHISQVRSTTLDTWLPDQVSFMQLMGNARSNKHWEAELPPNFDRNGYGIERFIRSKYVEKRWASKGELLPASKSAEIIFNRNESPAAGAKSAIQKNRRLSLEESIFVKHMNHVPPPIRSPTPGSQELSPDLKNKLSPLPVRRTSASFDFDNSRMKNNGSVDHFGLFSAPNAKQEFSTTPPSWITFDCKTEILLLHIFCSISWHTSYWN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9703g00002 316 SUPERFAMILY ArfGap/RecO-like zinc finger 61 172 IPR037278 -
Vium9703g00002 316 SMART arf_gap_3 62 175 IPR001164 GO:0005096
Vium9703g00002 316 ProSiteProfiles ARF GTPase-activating proteins domain profile. 62 183 IPR001164 GO:0005096
Vium9703g00002 316 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 47 295 IPR044520 GO:0005096
Vium9703g00002 316 Gene3D Arf GTPase activating protein 43 176 IPR038508 -
Vium9703g00002 316 MobiDBLite consensus disorder prediction 220 243 - -
Vium9703g00002 316 Pfam Putative GTPase activating protein for Arf 63 173 IPR001164 GO:0005096
Vium9703g00002 316 CDD ArfGap 65 165 - -
Vium9703g00002 316 PRINTS HIV Rev interacting protein signature 93 110 IPR001164 GO:0005096
Vium9703g00002 316 PRINTS HIV Rev interacting protein signature 74 93 IPR001164 GO:0005096
Vium9703g00002 316 PRINTS HIV Rev interacting protein signature 114 135 IPR001164 GO:0005096
Vium9703g00002 316 FunFam stromal membrane-associated protein 1 isoform X1 47 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9703g00002 Vium-Chr9703 11157 14132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9703g00002 65 165 C2H2 Transcription Factor Family AT4G05330 51.402 2.73e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9703g00002 K12486 - gmx:100802691 406.371