Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium96g00003 ATGATGGAGGGAGATGAGAATATTCAAGCATCAAAGGGGAAAAATGATGAAAGCTTCGCCAGCTTGGAGGCACCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGGAGGTTCAGTGATGAACAGATAAGGTCACTAGAATGCATATTAGAGACAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTGGCAAGAGATCTTGGCCTGCAGCCTCGCCAAGTTGCCATATGGTTTCAAAACAGAAGGGCGAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGGAAACTGAAGGATGAATATGACAATTTAGCATCTAGGTTTGAGTCCCTAAAGAAAGAGAAGGAGTCTTTGCAAGTAGAGTTGCAGAAGCTAAGTGATTTGGTGGTGTCATCACATGATGGTGGAAGGGAAGACAAGAGTGCCAAAGAACACAGCATAGAGGATGGTGGTTCAGGCAGTGGATACAGCAGTTGGAAGCCTGAAGCAAAACCAAGGTTTTCAAATGAGGGTTTGGAAGAGAGATTAGGTGTGTATTCAGATGATCAGAACGAGAATAGCATCATGAGGAGTGAGAAATCTGAGGACAAAGGACACCAACTTCTCAGAATGGATGATAATGATCACGCTGAGATGCCATTAGCATCACTTGAAAAATGGTACAGTAGTGTGGACCCTAATGGCATCTTGGACCAGTCATGTAGCAGCTCTCAGTGGTTAGATTTCTGGACTTAA 738 0.4336 MMEGDENIQASKGKNDESFASLEAPRKKNKKIENKRRFSDEQIRSLECILETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQKLSDLVVSSHDGGREDKSAKEHSIEDGGSGSGYSSWKPEAKPRFSNEGLEERLGVYSDDQNENSIMRSEKSEDKGHQLLRMDDNDHAEMPLASLEKWYSSVDPNGILDQSCSSSQWLDFWT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium96g00003 245 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Vium96g00003 245 Pfam Homeodomain 35 87 IPR001356 GO:0003677
Vium96g00003 245 CDD homeodomain 35 90 IPR001356 GO:0003677
Vium96g00003 245 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Vium96g00003 245 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 189 IPR045224 GO:0003700
Vium96g00003 245 SUPERFAMILY Homeodomain-like 24 89 IPR009057 -
Vium96g00003 245 MobiDBLite consensus disorder prediction 19 36 - -
Vium96g00003 245 Coils Coil 81 129 - -
Vium96g00003 245 MobiDBLite consensus disorder prediction 167 199 - -
Vium96g00003 245 Gene3D - 24 98 - -
Vium96g00003 245 MobiDBLite consensus disorder prediction 1 36 - -
Vium96g00003 245 MobiDBLite consensus disorder prediction 130 199 - -
Vium96g00003 245 MobiDBLite consensus disorder prediction 132 148 - -
Vium96g00003 245 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Vium96g00003 245 SMART HOX_1 32 93 IPR001356 GO:0003677
Vium96g00003 245 Pfam Homeobox associated leucine zipper 89 129 IPR003106 GO:0006355|GO:0043565
Vium96g00003 245 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Vium96g00003 245 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium96g00003 Vium-Chr96 33634 35672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium96g00003 1 245 Homeobox Transcription Factor Family AT2G46680 41.288 5.56e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium96g00003 Homeodomain 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium96g00003 K09338 - gmx:100793260 434.876