Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium969g00012 ATGGGGTGTGACTGTGGGGGGAAGTTAAATTTGAGAAAGCCTCATTTTTATGAGGTTTATTCCTCTGCCTTCAGCTCTCACAGACTGAAAATTCCAGATGGATTTTTGTGTCGCATGGAGGGAAGGACGTACGGGTCATTTTCATTGACTGGTCCCAGTGGAAACGTATGGACAGTGCACTTACTTAAGCAGGACAATGATCTATTCTTCCATCATGGATGGTCGTCATTTGTGGTGGATCATCGTCTAGAATGTGGTGACCTTTTGGTTTTCAGATACGAAGGTCATTTGCATTTCACCGTCCAAGTATTTGATAAGGATGGATGTGAGAAAGAGGCAGCATTTATGTCTGAATGTAGTCAAAGTTCGAGTGACTTTGAGGAAATTGTTGGACAGAAAAGAGATGTGAAGGAGAGTTCTTCTTTGGATATTGCATTTGATGGTGTTGCTAAGAAAAGGAGAGGTTGTAAATATGAGAACCGGGAACATGAACCAGGGTTTGTTGGTAAAGAACTATTGCGATATGAGGTAGTAAGACCGATTAGAATGTTCAGAGAAACTGAAGAAACTTCGAAAGCTTGTTTGGCTAATGATAGCCTTGTGCCTTTTCACATGGACCATCGAAATGAAGAGGCTGCCATCCTGTACAGAAATGGAAAGGAAGATGGTCATTATTTTCTTGGTGGAGTTTCATTATCAAATGTATCAGCACAAGATGAGAAAAAAGTTGCTCAGTCTTTTACTTCCAAATTTCCGTATTTTGTTAGAATCATGAAAAGCTTCAATGTCAGTGGTTCATATACTCTGAATATCCCATATCAGTTTTCCATGGCGCACCTTCCCAATTGCAAGATAAAGATTATTCTTCATAATTTGAAAGGAGAACATTGGACTGTCAATTCTGTGCCAACAACTAGAGTGCATACTAGTCACACACTTTGTGGAGGATGGATGGCTTTCGTTCGTGGTAATAACATTAAGATTGGAGATATCTGTATTTTTGAGCTTGTGAACGAGTGTGAATTACGTGTTCACATTGCTGGGGTTGGAAAAGATGGTCTAGAAGACGACCAGGTTGGAAGAGTGAATGCAGGGCATGCTGGAACTACCAGATATATGCCAATGAATGCTAAAGTAAACTCAAAGTCCATAAGAAAAGTTGATCTATCAGATAAAAAATGGCCCAAGATTGGTCAAGAAACTGTTTTATCCATTGACCTTAAGAAATCTGGTAGAGCTTCAAATACTTCTAAGAAGATGGGCCTTTGCCCTCAGTCCAAAGCTGCCCATAAAAAGTTGGCTACTCCGAGGAGACATCGGGTTGAAGATGAGCTAAGCTCACAGGCTAAATCTGGTTTGAGAATGTTGTTTGCACTGGATGAACAAAGAGTAGCTCAAGCTTTTAGTTCCCCTTTTCCCAGTTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGCTCATACACTTTGAAAATTCCATACCAGTTCTCAGCTGCACATCTCCCAACTTACAAAACTGAAGTTATACTTCGTAATTCAAGAGGTGAATGTTGGACTGTGAACTCTGTACCAGATGCAAAAGGCCGAACAGTTCACACCTTTTGTGGGGGTTGGATGGCCTTTGTTCGTGACAATGACATAAATTTTGGTGACACATGCATTTTTGAACTGGTTACTCAATGTGAGATGCAGGTGTACATATCTGGGGTCGGAAAGGAAGGGCCTGACCATCAAAATGCCCACTTAAAACTTGACAGATTATCTATCCTTCCATCTACCTGCTAA 1785 0.4056 MGCDCGGKLNLRKPHFYEVYSSAFSSHRLKIPDGFLCRMEGRTYGSFSLTGPSGNVWTVHLLKQDNDLFFHHGWSSFVVDHRLECGDLLVFRYEGHLHFTVQVFDKDGCEKEAAFMSECSQSSSDFEEIVGQKRDVKESSSLDIAFDGVAKKRRGCKYENREHEPGFVGKELLRYEVVRPIRMFRETEETSKACLANDSLVPFHMDHRNEEAAILYRNGKEDGHYFLGGVSLSNVSAQDEKKVAQSFTSKFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVNECELRVHIAGVGKDGLEDDQVGRVNAGHAGTTRYMPMNAKVNSKSIRKVDLSDKKWPKIGQETVLSIDLKKSGRASNTSKKMGLCPQSKAAHKKLATPRRHRVEDELSSQAKSGLRMLFALDEQRVAQAFSSPFPSFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWMAFVRDNDINFGDTCIFELVTQCEMQVYISGVGKEGPDHQNAHLKLDRLSILPSTC 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium969g00012 594 CDD B3_DNA 21 105 IPR003340 GO:0003677
Vium969g00012 594 Gene3D - 8 109 IPR015300 -
Vium969g00012 594 Pfam B3 DNA binding domain 475 562 IPR003340 GO:0003677
Vium969g00012 594 Pfam B3 DNA binding domain 254 346 IPR003340 GO:0003677
Vium969g00012 594 Pfam B3 DNA binding domain 21 106 IPR003340 GO:0003677
Vium969g00012 594 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 27 352 IPR044837 -
Vium969g00012 594 ProSiteProfiles B3 DNA-binding domain profile. 254 350 IPR003340 GO:0003677
Vium969g00012 594 Gene3D - 234 349 IPR015300 -
Vium969g00012 594 Gene3D - 460 570 IPR015300 -
Vium969g00012 594 ProSiteProfiles B3 DNA-binding domain profile. 475 571 IPR003340 GO:0003677
Vium969g00012 594 CDD B3_DNA 252 346 IPR003340 GO:0003677
Vium969g00012 594 SUPERFAMILY DNA-binding pseudobarrel domain 468 569 IPR015300 -
Vium969g00012 594 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Vium969g00012 594 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Vium969g00012 594 SMART B3_2 16 107 IPR003340 GO:0003677
Vium969g00012 594 SMART B3_2 254 352 IPR003340 GO:0003677
Vium969g00012 594 SMART B3_2 475 571 IPR003340 GO:0003677
Vium969g00012 594 SUPERFAMILY DNA-binding pseudobarrel domain 247 348 IPR015300 -
Vium969g00012 594 CDD B3_DNA 473 567 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium969g00012 Vium-Chr969 147723 151684 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium969g00012 11 105 B3 DNA Binding Superfamily AT3G18990 37.500 5.99e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vium969g00012 B3 1.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium969g00012 - - gmx:100814386 1023.46