Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium969g00010 ATGTTCACCAATTCACATACGCTAATGCAAACTTTGTTGTCATCTTTGCCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCTGAGGTCAAGGAAGTGGGGTGTTTCGGCAAAGTGATTTACAGCGACATGTGTTCAACTTCTGATTCTGGGAGCAGTGGAGCTAGTGATTTGAGTCATGAGTTCCATAACCTTGGTCACCATCGTGAGCCCACGTTGAAGTTAGGCTTTGGAACAATGGATTTGAATCCTCGCCATCATCAGGTTCATGGTGACACCAGAAGCTTCACTCACCATAACCACCACCACCACCACCACCACCTTCAGCCTCACATCTACGGCCGCGATTTCAAACGAACTGCAAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCTCGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCCCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACCACAGGCCATGGGCAGACAAATATTGCAGTATTGAATCCAAGGCAAGGGATTAACATTGTTCATCTGCATGCACCTTCACCCAATTTACCAGACCCGATTCAAAGTTCCCACAGGACAGCGTGGCAACAATCATCAATAGAGACAAAAACAAAGAACAGTAGACAAGAAGCAGAGATGGGTTTGACGTATTGTGAGGTGAAGGGAAGTGAAAGCATGGTGAATGGCTTGGATTCTACCAGTTTGTCACGTTCCGAGGGAATGCTTGACCTAGAATTCACCCTTGGAAGACCCATTTGGCAAAAAGACCACGCAGAATCATCCAGAGAGTTAACTCTTTTAAACTGCTGA 942 0.4703 MFTNSHTLMQTLLSSLPEPDLSLNISPPSISEVKEVGCFGKVIYSDMCSTSDSGSSGASDLSHEFHNLGHHREPTLKLGFGTMDLNPRHHQVHGDTRSFTHHNHHHHHHHLQPHIYGRDFKRTARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTTGHGQTNIAVLNPRQGINIVHLHAPSPNLPDPIQSSHRTAWQQSSIETKTKNSRQEAEMGLTYCEVKGSESMVNGLDSTSLSRSEGMLDLEFTLGRPIWQKDHAESSRELTLLNC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium969g00010 313 Pfam Myb-like DNA-binding domain 138 189 IPR001005 -
Vium969g00010 313 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 19 301 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vium969g00010 313 FunFam Myb family transcription factor 135 193 - -
Vium969g00010 313 SUPERFAMILY Homeodomain-like 134 191 IPR009057 -
Vium969g00010 313 Gene3D - 136 193 - -
Vium969g00010 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 190 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium969g00010 Vium-Chr969 112926 117164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium969g00010 99 204 G2-like Transcription Factor Family AT5G42630 76.415 9.41e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium969g00010 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium969g00010 - - vra:106764099 572.778