Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium969g00008 ATGCTAAGAGAGGAAACGGTGGGTTCCAGAAGTGCCAGGCACACCGCCGCCTCCGCCACCGTCTCCAACAAGGTTCTCGTCGCCGTCAAGGAGGAGAAAGTGATCTCCAACACCGCATTAGCCTGGGCTCTCACTCATGTCGTTCACTCCAGCGACTCCATCACGCTCCTTGCCGTTTACTCTGCTCAAAAAACCGGCAGAAGATTCTGGCATTTTTCGAGAATTGCTGGAGACTGTACGACCGGACCGGCGGCGAAGTTGCCGGAGCGAATTTCAGATATCTCCGAGTCTTGTGCGCAGATGGTGCTTCAGTTGCACAATCAAGTTGAGGTAAGGGTAAAGATTAAGGTGGTCACGGGTACTCCCAGTGGTGCTGTGGCGGCCGAGGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAATCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCTCAGACTTAACTTAGGGTGTTCCGATGAACTCCAAACCCCTTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGCTAAAAGGCGGAAGATTGATGCATTCTACCCCAGTGGGTAGCCCTGAAGAAGCAGGTACTTCTGTTATAAGAAATATAGGAGTAAATTCAGGGTCAAGTTCGGACTCGATGACTTCTCCTTTCCTTGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGCCCAGGAAAAAACATACACAAAGCAATCAACGAACAGATAGATTTCAATGTCCAGCCACCATTATACTTTGACATTGAAAGAGATCGCCCTCCCCCGCTATGGCCGCGTCCAACAGCATCCGTGGCTAGTGAAAACAAGACAGTATTTTGGATTCCTCAAAACCACATTGTAGACGAGAAGTTTCAGAAAACTAAAAACAACAGTACTATCCAAAGAACTAAATCTCCATCTTCGAAAACTTTACTTGAGAATTTTAAGCGTTGTGATCAAGAGATGAGAAGAAATGAATACGGGTTTGACCAAGCTCAAAGTAGAAGATACGACACGGGCAACAGAGATAATTCCATACCTTTGGGAAGAACTACCTCAATACCTCCTCCCTTGTGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAAAGAGCTAGAGGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTCGGTGTGGTCCACAAGGGAATCCTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAGTGTGGGGGTTCTCAAGCAGATCTTGACTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGGTTTTGTACAGAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGAGATGAGAGTATGCCTCTCGATTGGAACTCACGCTTAAAGATTGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCATGAAGACTGTAGAGTTGGTTGTATAGTGCACAGAGACTTTCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCGGATTTTGGGCTTGCTAGATGGTACTCAGAATGGAATATAGATACAGAAGATCGAGTTCTAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGACGCCGGAAATCTTACATATAAAATAGATGTATATGCATTTGGAATTGTATTAGTAGAGTTAATAACAGGTAGAAGAATTAGCGAGTTGGAACAGTTCAACGGATTCTCGTATCTTCCTGAATGGATTCACCCTCTACGCATGTTAGAGCCCAGTCATATCTTACAAAACGTCAGTTCTCCCAAACCATTGGAATTTAATCTTCAATGGCAAGCTATGGCTCGAGCTGCTTCGTTGTGTCTCCGTGTGGATCCCGATGCCAGACCCCCAATGTCAAAGATCCTGAGAGTGCTGGAAGGGGGTGATCCAGTTCGTCCTATGGGTTTAGACATAAACTCAATTGGTAACACAAGTGGGCATTTAAGCGGTTTGAAGTCGCTCACTCCACCAGAAGCTACAATAACTCATTCTCGTACACTATCACATTGA 2175 0.4524 MLREETVGSRSARHTAASATVSNKVLVAVKEEKVISNTALAWALTHVVHSSDSITLLAVYSAQKTGRRFWHFSRIAGDCTTGPAAKLPERISDISESCAQMVLQLHNQVEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVNHCMDELNCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGIEIAKLKGGRLMHSTPVGSPEEAGTSVIRNIGVNSGSSSDSMTSPFLVYEQNPLYEGQGPGKNIHKAINEQIDFNVQPPLYFDIERDRPPPLWPRPTASVASENKTVFWIPQNHIVDEKFQKTKNNSTIQRTKSPSSKTLLENFKRCDQEMRRNEYGFDQAQSRRYDTGNRDNSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKCGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTESNLRILVYEYICNGSLDLYLYGDESMPLDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDFRPKNILLTHDFEPLVADFGLARWYSEWNIDTEDRVLGTSGYLAPEYLDAGNLTYKIDVYAFGIVLVELITGRRISELEQFNGFSYLPEWIHPLRMLEPSHILQNVSSPKPLEFNLQWQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVRPMGLDINSIGNTSGHLSGLKSLTPPEATITHSRTLSH 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium969g00008 724 Pfam Protein tyrosine and serine/threonine kinase 415 679 IPR001245 GO:0004672|GO:0006468
Vium969g00008 724 Gene3D Phosphorylase Kinase; domain 1 378 484 - -
Vium969g00008 724 Gene3D HUPs 9 175 IPR014729 -
Vium969g00008 724 Gene3D Transferase(Phosphotransferase) domain 1 485 685 - -
Vium969g00008 724 FunFam Os07g0541700 protein 485 573 - -
Vium969g00008 724 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 484 - -
Vium969g00008 724 MobiDBLite consensus disorder prediction 703 724 - -
Vium969g00008 724 PANTHER OS01G0750732 PROTEIN 157 682 - -
Vium969g00008 724 SUPERFAMILY Protein kinase-like (PK-like) 389 680 IPR011009 -
Vium969g00008 724 ProSiteProfiles Protein kinase domain profile. 409 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium969g00008 724 ProSitePatterns Tyrosine protein kinases specific active-site signature. 530 542 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium969g00008 Vium-Chr969 85442 97154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium969g00008 384 676 Trihelix Transcription Factor Family AT1G68690 46.179 2.03e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vium969g00008 PK_Tyr_Ser-Thr 6.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium969g00008 - - var:108323674 1459.89