Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9696g00010 ATGGACTCTTCTTCATCACCGCCAAACAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTCCCAAACCCCTCTTCCTCTCACTCTACCTCTCCTCTCTCCCTTTTCCACTCCTTCGCCTCTTATCCATCTCTCACACTCACAGGCAGCAGCACCGTGGATGCACCACCGGAGGCAGCAGGCCGCGGAGGGGCCACCAACCTCTCCATATTCACCGCTGCTCCCAAGTTTGAGGACTTTCTTGGCAGTTCCGCCACAGCAGACACCACCGCCACGGGTGCACCGCCACAACTTCCGCAGTTCTCCACTGACAACAACCTATACGAATCGGAGCTGAAGACAACAATAGCCGCCTGCTTTCCTCGCGGCTTCGCCGCCGAAGCAAGCACCGAACCTCAAAAGCCCTCTCCGAAGAAAACCGTGGACACCTTCGGCCAACGTACTTCCATCTACCGTGGCGTCACTCGGCACAGATGGACCGGAAGATATGAAGCTCATCTATGGGACAATAGTTGTAGAAGGGAAGGACAGAGTAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGATAAGGCAGCTAGAGCTTACGATCTCGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCGATTTCCAACTATGAGAAGGAGCTGGGAGAGATGAAGAACATGACGAGGCAGGAGTTTGTTGCTTCTCTACGAAGGAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACTCAAGAGGAAGCTGCCGAGGCCTATGACATTGCAGCTATAAAATTCAGGGGGTTAAATGCAGTCACAAACTTCGACATGAGTCGCTACGACGTGAAGAGCATTGCAAACAGCACACTTCCCATTGGGGGTTTGTCTAGCAAGAACAAGACATCCGCGGATTCGGCATCTGAGAGCAAAAGCCACGAGGCAAGCCGATCGGACGAACGAGATCCGTCATCAGCTTCATCCGTGACCTTTGGATCACAGCAGCAGCCTTCCAGCTCTACCTTAAGCTTTGCCATCCCTATCAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCACAATCCTACTCTCGACAACAGTGGGGTCAGGAACACTGCTAGTGTTACTACAACTTCACCCTTCCAAATGGACCTCTCAAGTGCCCCCTCAAATACCGGCAGTGAAAACAACGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAGCAAAGTGGTCATGGTCATGGAAATGGGAATGGTCATGGTCATGGAAATGGAAGCGGTGGTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATCTTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTACGGCAACTGGATTGGACCTACTCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACCCCGATATTTGGCATGGAATGA 1566 0.5128 MDSSSSPPNNNNSLAFSLSNHFPNPSSSHSTSPLSLFHSFASYPSLTLTGSSTVDAPPEAAGRGGATNLSIFTAAPKFEDFLGSSATADTTATGAPPQLPQFSTDNNLYESELKTTIAACFPRGFAAEASTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKTSADSASESKSHEASRSDERDPSSASSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNPTLDNSGVRNTASVTTTSPFQMDLSSAPSNTGSENNAAFFSGGGIFVQQQSGHGHGNGNGHGHGNGSGGSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9696g00010 521 FunFam AP2-like ethylene-responsive transcription factor 252 313 - -
Vium9696g00010 521 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 MobiDBLite consensus disorder prediction 326 376 - -
Vium9696g00010 521 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 MobiDBLite consensus disorder prediction 447 466 - -
Vium9696g00010 521 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 MobiDBLite consensus disorder prediction 1 32 - -
Vium9696g00010 521 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Vium9696g00010 521 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 FunFam AP2-like ethylene-responsive transcription factor ANT 150 219 - -
Vium9696g00010 521 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Vium9696g00010 521 MobiDBLite consensus disorder prediction 356 376 - -
Vium9696g00010 521 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Vium9696g00010 521 MobiDBLite consensus disorder prediction 340 355 - -
Vium9696g00010 521 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Vium9696g00010 521 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Vium9696g00010 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 76 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9696g00010 Vium-Chr9696 61451 65111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9696g00010 96 410 AP2-EREBP Transcription Factor Family AT5G57390 66.766 9.29e-142 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium9696g00010 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9696g00010 K09285 - gmx:100797828 845.499