Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9696g00009 ATGGCTACAGATTCGTCTTTTGAGGGTCTTGCTCTTGATCCTTCCAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATACTGCAGTCATGGAGCCGTCAGGAGATTTTGCAAATATTGTGTGCAGAGATGGGAAAAGAGAGAAAGTATACTGGGTTGACGAAGTTGAAAATTATAGAAAATCTTCTTAAAATTGTTTCTGAAAAGAAATCAGGGGGGCATGAAACTGCGACAGACCCTGAACCACATTCTTCGCCTGCATCTGGTCAGAAACCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCTCAGTTACCTGTTCCTGTGACCAGCATTTCAGTCAATAATGGTAGTGATTCTGTTAATACTACATACTGTAAGAACTCAGCCTGCAAAGCTACCATGAATCAAACAGATGCATTTTGTAAAAGATGTTCATGCTGCATTTGTCATCAATACGATGATAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCATGTGGCTTGTCATGCCACCTTGAGTGTGCTTTGAAACATGATGGTTCTGGAATTGTCAAAGATGGGGATCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTTGCTTGTGGGAAAGTAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGTGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAGAGACTTTTACAAGGAACTGAAAAGTATGACGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGCCCACTCACTGGCTCACCGGTGAAGATTGGTAGGGGAATTGTGAACAGGCTTTCATCAGGACCCGAGGTTCAGAAACAATGTGGTTTTGCTCTTGAATCGCTTGATTCACTGCTTTCGAAAAGGATCTTGCCATCATCACCCAATCCAACAACTCAAGATGCACATCTGGTGGCTCCTAATATGGTGAGGTTTGAAGATGTCAGTGCTACATCCCTGACTATTATTTTGGGTTCCGAAGAACCCTCTGGTGAAAACATCGCTGCTTACACCATGTGGTATCGCAAAGCTGATGAAGTGGACTATCCGATGGAGCCGACATGCACCTCGCTGGTACCAAATAGAAGGTTCAGTGTCAGGGGTCTACTTCCAGGTACAGAATACAGATTCAAAGTTGTTCCAAATGATTCGAGGGTATCAGGTGTGTGCGAAGTTCAAATCTCAACAGAGCTTGGGGAGGATGAAGTCCCTAATTGCTCTGCAACAGAGAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTAGAAGATGAAACTAATAACTGCAATCCATACAGTGACCTGACCAATAACCGAGCAGGTCATTATCCATCTTTTCGCAAGGAAAGCGACCAGCTTGCTTCTGGAAATTTATCTAATGATGGTGTTAACTGTTCCAACATAGATGTTGTGGGTCTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGTAGGAATGACTGCCTCCATACCCAGTTCTGATGTGCTAAAGCTGGAAGACAAGCACTCGCCGGAGGAACAAGTGACTGAGGACATCATGAGCATTGACGATGGTTTGAATTCCCGAGTTGTAACGGGTAGGGAATGTGTGCCGTGGGTAGGTAGCTCGGAAGGAGGGTTGCCAAATACTCCGTGCAAGTTGGAAAGCCTTAAGGATGGAGCAGGAAGGAGTGGAAGATCGAAGTCGATTGCGAAAGATCAAGAAAATGGATCAGGGAAAAGGGAGGGACCCCAGGATGGAAGCACATCCAAGAAGAGAAGCGGAGAAAGGCAAGATGAGGGCCGCTTGACCAATGGATTTTCGGAGCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGGCACATAGAGAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCAGAATGTATATCCAGCAAGAGAATATCAGTGGTGCCATCGGGGTTCTGCATGAAGCTTTGGCATTGA 2217 0.4416 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEILQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGHETATDPEPHSSPASGQKPAKRQRKSENPSQLPVPVTSISVNNGSDSVNTTYCKNSACKATMNQTDAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIVKDGDRPKLDGGFYCVACGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEKYDELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKQCGFALESLDSLLSKRILPSSPNPTTQDAHLVAPNMVRFEDVSATSLTIILGSEEPSGENIAAYTMWYRKADEVDYPMEPTCTSLVPNRRFSVRGLLPGTEYRFKVVPNDSRVSGVCEVQISTELGEDEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTNNRAGHYPSFRKESDQLASGNLSNDGVNCSNIDVVGLPPDADSLSDKQHAVGMTASIPSSDVLKLEDKHSPEEQVTEDIMSIDDGLNSRVVTGRECVPWVGSSEGGLPNTPCKLESLKDGAGRSGRSKSIAKDQENGSGKREGPQDGSTSKKRSGERQDEGRLTNGFSERDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRISVVPSGFCMKLWH 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9696g00009 738 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Vium9696g00009 738 CDD FN3 346 420 IPR003961 GO:0005515
Vium9696g00009 738 MobiDBLite consensus disorder prediction 601 645 - -
Vium9696g00009 738 MobiDBLite consensus disorder prediction 590 645 - -
Vium9696g00009 738 Gene3D Immunoglobulins 329 430 IPR013783 -
Vium9696g00009 738 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Vium9696g00009 738 MobiDBLite consensus disorder prediction 114 129 - -
Vium9696g00009 738 Pfam Fibronectin type III domain 346 419 IPR003961 GO:0005515
Vium9696g00009 738 MobiDBLite consensus disorder prediction 442 486 - -
Vium9696g00009 738 MobiDBLite consensus disorder prediction 442 490 - -
Vium9696g00009 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 738 IPR044514 GO:0010048|GO:0040029
Vium9696g00009 738 CDD PHD_VIN3_plant 161 226 - -
Vium9696g00009 738 MobiDBLite consensus disorder prediction 85 129 - -
Vium9696g00009 738 SUPERFAMILY Fibronectin type III 346 424 IPR036116 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9696g00009 Vium-Chr9696 33424 38496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9696g00009 4 605 PHD Gene Family AT4G30200 47.887 2.06e-165 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9696g00009 - - gmx:100794721 1349.73