Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9696g00001 ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGTTCTTCTCCTTTGGAAGACGTAGTTCAAGGGAGCAAGTTCTGAGTCCTAATGGTGGAGAAAGTCACGAGACTCTTCCGTCTAAAGAAGAGCCTTCTGGAAGACCCTCTTGGAAGTGCTTCTCTTATGATGACTTGTTTGATGCCACAAATGGCTTCAGCTCAGAAAATTTGGTTGGAAAGGGAGGGTATGCGGAAGTGTACAAGGGGACAATGAATGGGGGAGAAGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGACGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAATGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGCCTTTACCTTGTTTTTGAGTTATCTTCTAGAGGTTCTGTTGCATCCCTTCTTCACGATGAAAAGTTGCCCCCTTTAGATTGGAAAACGAGGCACAAGATAGCCATTGGAACTGCTCGCGGCCTCCACTACTTGCATAAGGGCTGCAAAAGGAGGATAATCCACCGGGACATTAAGGCATCAAACATTTTGTTAACAAAGGATTTTGAGCCACAGATATCTGATTTTGGACTAGCAAAATGGCTTCCATCTCAGTGGACTCATCATTCCATTGCCCCAATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCTTGCTGGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCACACCAAAGCTTACACAGCTGGGCCAAACCAATTTTGAACAAGGGTGGGATTGAAGAGTTGGTAGATCCAAGGCTTGAAGGGGCTTATGATGTTACACAGTTAAAAAGATTTTCCTTTGCTGCATCTCTCTGCATTCGAGCTTCTTCGACTTGGCGACCCACCATGACTGAGGTACCTTACACTTCTTTCTTCACTTCTTTCTTTCCCTTCTTTTACCACAATAATACACACATTAACAAATCATTAATAAAACAACTTACTGCT 1068 0.4382 MRYIRSNSFKRFFSFGRRSSREQVLSPNGGESHETLPSKEEPSGRPSWKCFSYDDLFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLLHDEKLPPLDWKTRHKIAIGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGGIEELVDPRLEGAYDVTQLKRFSFAASLCIRASSTWRPTMTEVPYTSFFTSFFPFFYHNNTHINKSLIKQLTA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9696g00001 356 MobiDBLite consensus disorder prediction 22 45 - -
Vium9696g00001 356 Gene3D Transferase(Phosphotransferase) domain 1 141 330 - -
Vium9696g00001 356 PANTHER OS08G0249100 PROTEIN 34 326 IPR046958 -
Vium9696g00001 356 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Vium9696g00001 356 ProSiteProfiles Protein kinase domain profile. 63 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9696g00001 356 FunFam Putative receptor-like serine/threonine-protein kinase 141 331 - -
Vium9696g00001 356 Gene3D Phosphorylase Kinase; domain 1 35 139 - -
Vium9696g00001 356 FunFam Putative receptor-like serine/threonine-protein kinase 31 139 - -
Vium9696g00001 356 Pfam Protein tyrosine and serine/threonine kinase 66 270 IPR001245 GO:0004672|GO:0006468
Vium9696g00001 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Vium9696g00001 356 SMART serkin_6 63 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9696g00001 356 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9696g00001 Vium-Chr9696 636 2721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9696g00001 51 326 Trihelix Transcription Factor Family AT1G70460 44.912 6.39e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vium9696g00001 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9696g00001 - - gmx:100305398 611.298