Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9692g00002 ATGCCCTCTGCTCAGGATCCATTTTATGTTGTCAAGTCCGAGATTCAAGACTCGATTGATAAGCTGCAATCTACTTTTCATCAATGGGAAAGCACTTCCAATGCTGCAGAACAGGGACGTCTTACGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGATGAAATTGAGCTTGAAAGCCGAAGGACATGGACAAGCAATGCTCGATCTCAGGTTGTCACAATGAAGAAAGCGTTGGAGGCTGGAAAGGGCTCAAGTACCACAAGCCACAGCAGTGTAAATGGGATGCGCCAAGAACTCATGAGGCTACCAAGTTCTCATAAAAATGATACCTACAACCAGTATGCTGCCCGAGATAATGATGATTTCATACAATCGGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTAGATGAGCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATTCATGATGAACTCACTGCACAGGACAGGATTCTAGAGGAACTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTACAAAGGGTCAGATCATGATGATATGTGCTTTGCTGGCTCTGTTCATCTTCCTATTTATCTTAGTATTCTTCACCTAG 741 0.4238 MPSAQDPFYVVKSEIQDSIDKLQSTFHQWESTSNAAEQGRLTKEVRAGCESIEWQVDELDKAIAVASRDPSWYGIDEIELESRRTWTSNARSQVVTMKKALEAGKGSSTTSHSSVNGMRQELMRLPSSHKNDTYNQYAARDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELTAQDRILEELGSEMDSTTNRLDFVQKKVGMVMKKASTKGQIMMICALLALFIFLFILVFFT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9692g00002 246 SMART tSNARE_6 149 216 IPR000727 -
Vium9692g00002 246 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Vium9692g00002 246 Gene3D - 161 225 - -
Vium9692g00002 246 Pfam SNARE domain 191 242 IPR000727 -
Vium9692g00002 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Vium9692g00002 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Vium9692g00002 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vium9692g00002 246 PANTHER GOLGI SNARE BET1-RELATED 112 242 - -
Vium9692g00002 246 CDD SNARE_Qc 157 213 - -
Vium9692g00002 246 Coils Coil 192 212 - -
Vium9692g00002 246 FunFam Syntaxin 10 3 104 - -
Vium9692g00002 246 Gene3D - 2 104 - -
Vium9692g00002 246 FunFam syntaxin-61 isoform X1 157 218 - -
Vium9692g00002 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9692g00002 Vium-Chr9692 1860 5941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9692g00002 55 246 SNARE and Associated Proteins AT1G28490 69.792 5.41e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9692g00002 K08500 - gmx:100787129 402.905