Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9692g00001 ATGCCCTCTGCTCAGGATCCATTTTATGTTGTCAAGTCCGAGATTCAAGACTCGATTGATAAGCTGCAATCTACTTTTCATCAATGGGAAAGCACTTCCAATGCTGCAGAACAGGGACGTCTTACGAAGGAGGTTCGTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAAGCAATTGCTGTAGCGTCTAGAGATCCTTCTTGGTATGGAATTGATGAAATTGAGCTTGAAAGCCGAAGGACATGGACAAGCAATGCTCGATCTCAGGTTGTCACAATGAAGAAAGCGTTGGAGGCTGGAAAGGGCTCAAGTACCACAAGCCACAGCAGTGTAAATGGGATGCGCCAAGAACTCATGAGGCTACCAAGTTCTCATAAAAATGATACCTACAACCAGTATGCTGCCCGAGATAATGATGATTTCATACAATCGGAATCAGATAGACAAATGCTTCTTATAAAGAAACAGGATGAGGAATTAGATGAGCTTAGTGAAAGTGTACGAAGAATTGGAGGTGTTGGACTTACAATTCATGATGAACTCACTGCACAGGACAGGATTCTAGAGGAACTTGGTTCTGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAGTGAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAG 666 0.4294 MPSAQDPFYVVKSEIQDSIDKLQSTFHQWESTSNAAEQGRLTKEVRAGCESIEWQVDELDKAIAVASRDPSWYGIDEIELESRRTWTSNARSQVVTMKKALEAGKGSSTTSHSSVNGMRQELMRLPSSHKNDTYNQYAARDNDDFIQSESDRQMLLIKKQDEELDELSESVRRIGGVGLTIHDELTAQDRILEELGSEMDSTTNRLDFVQVKKSGNGYEEG 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9692g00001 221 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Vium9692g00001 221 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Vium9692g00001 221 Gene3D - 156 214 - -
Vium9692g00001 221 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 207 IPR000727 -
Vium9692g00001 221 CDD SNARE_Qc 157 212 - -
Vium9692g00001 221 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Vium9692g00001 221 FunFam syntaxin-61 isoform X1 157 215 - -
Vium9692g00001 221 FunFam Syntaxin 10 3 104 - -
Vium9692g00001 221 SUPERFAMILY SNARE fusion complex 152 211 - -
Vium9692g00001 221 SMART tSNARE_6 149 214 IPR000727 -
Vium9692g00001 221 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9692g00001 Vium-Chr9692 1859 5941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9692g00001 55 215 SNARE and Associated Proteins AT1G28490 67.702 1.07e-72 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9692g00001 K08500 - gmx:100787129 373.244