Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9672g00004 ATGTCTATTAGTGTGCATCTGATACATAGATCCACAAAAATAAAATATCCACGCTTAACAGACTACGACACGTTACTTCAGAATTTACGTGATTTAAAGGAAGGAAAGCCTGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGAACAGGATACAGGACAGTAGAAGCTCCAACTTCTCATATCGTGTTTATAGAGGGCATCTATGCCTTGAGTGAAAAGTTACGACCTCTACTGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATTCAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTGTATCCAATGTACAAGGCCTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCAACTTACATATTAAAGTCAGCAAAGAATCTCGCAGTGGATCAAATTAAAGCTGTTCTCTCTGAGGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCTGGTGAAGATCCAGAGACTTGCCAATCATATTTGCGAATGCGAAATAAGGATGGGAAATACAGCCTCATGTTTGAGGAATGGGTGACTGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTTAGTGTGCGCCTTCTCGGTGGACTAATGGCCTTGGGGTACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTTTTCTCTGATGATAGGGTTTGTGTGAAACTGGATTGGCTTGAGCAACTCAATAGACATTATGTTCAGGTACAAGGAAGAGATCGCTTGGTTTTACAATACATAGGACAGCAGCTAGGTCTAGATGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGGACGAGGTTATGGCCCTACCAGAGGATTTGAAGACAAAACTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACCAATCAAAGAGACAAAAACCTTGCTAAGGTTACTGGATATGATTCCAACAATAGAAGGTTTGGTGAAAGAAATTCAGAGTCCAGCACAATGTCAGTGAATCAGGGAGCAATCAATCAACTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAATTAAACACCAAGAGAAATTCTCCAAGCCAACAGAATATGTCACTTCAAACTGAGACTTGCAATGGATCAGCTCCCACCTCATACTTCATCACTAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGGCAAATTCCTCTTCATCATCACAGTTAAATAAGGATTCTCCTTTAATGGAAGAGATATCAAGCATTGCACGCAGTCAGCGTCAGATCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGTAGCTCAGGGGAGAAGTCTCAACAAACAAGAACTAACCGGAGAAACATGGATACGACAGCAGATTCCATGGGAACCTCTGTTATGGCAGTGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTGTTGAACCGTAATTGA 1701 0.4074 MSISVHLIHRSTKIKYPRLTDYDTLLQNLRDLKEGKPVQVPIYDFKSSSRTGYRTVEAPTSHIVFIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSAKNLAVDQIKAVLSEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLQYIGQQLGLDGSYIPRTYIEQIQIEKLVDEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYDSNNRRFGERNSESSTMSVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLNTKRNSPSQQNMSLQTETCNGSAPTSYFITSLGNGSLTGSKMANSSSSSQLNKDSPLMEEISSIARSQRQIMHQLDNLNNLLRGSSGEKSQQTRTNRRNMDTTADSMGTSVMAVVAVGCLGIFLMKGLLNRN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9672g00004 566 MobiDBLite consensus disorder prediction 381 401 - -
Vium9672g00004 566 Pfam CYTH domain 155 307 IPR023577 -
Vium9672g00004 566 ProSiteProfiles CYTH domain profile. 151 313 IPR023577 -
Vium9672g00004 566 PANTHER URIDINE KINASE 20 326 - -
Vium9672g00004 566 Coils Coil 406 440 - -
Vium9672g00004 566 MobiDBLite consensus disorder prediction 432 454 - -
Vium9672g00004 566 CDD UMPK_like 16 142 - -
Vium9672g00004 566 MobiDBLite consensus disorder prediction 434 454 - -
Vium9672g00004 566 Gene3D - 6 173 IPR027417 -
Vium9672g00004 566 MobiDBLite consensus disorder prediction 515 537 - -
Vium9672g00004 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 141 IPR027417 -
Vium9672g00004 566 Pfam Phosphoribulokinase / Uridine kinase family 16 139 IPR006083 GO:0005524|GO:0016301
Vium9672g00004 566 SUPERFAMILY CYTH-like phosphatases 168 310 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9672g00004 Vium-Chr9672 21414 33261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9672g00004 16 139 PRT Gene Family AT5G40870 30.709 6.95e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9672g00004 K00876 - gmx:100797542 978.778