Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9672g00003 ATGGTTGCGGTTGTTTGTGTTGTTGCTGAACTCACTGTAACTGCTCGTTCAGGGAGGAGGCTCGAAACTGGGAATTGTTCAATGGGAAAAGAGATTTCTGATTCTGATTCCCATCACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTGTGATCGCCATGAAATTGCTCCAATCCAAGACCAACTATCCTTTGAGAAGGGTTTTTTCATTGTAATTCGTGCATGCCAATTGTTAGCACAAAAGAATGATGGAATAGTATTGGTAGGGGTGGCAGGTCCTTCCGGAGCAGGCAAGACTGTATTTACTGAAAAGATACTGAACTTCATGCCCAGCATTGCTGTCATTTCAATGGATAATTACAATGATTCCAGTCGAATTGTTGACGGCAACTTCGATGATCCACGCTTAACAGACTACGACACGTTACTTCAGAATTTACGTGATTTAAAGGAAGGAAAGCCTGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGAACAGGATACAGGACAGTAGAAGCTCCAACTTCTCATATCGTGTTTATAGAGGGCATCTATGCCTTGAGTGAAAAGTTACGACCTCTACTGGACCTTCGAGTCTCTGTTACAGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATTCAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTGTATCCAATGTACAAGGCCTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCAACTTACATATTAAAGTCAGCAAAGAATCTCGCAGTGGATCAAATTAAAGCTGTTCTCTCTGAGGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCTGGTGAAGATCCAGAGACTTGCCAATCATATTTGCGAATGCGAAATAAGGATGGGAAATACAGCCTCATGTTTGAGGAATGGGTGACTGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTTAGTGTGCGCCTTCTCGGTGGACTAATGGCCTTGGGGTACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTTTTCTCTGATGATAGGGTTTGTGTGAAACTGGATTGGCTTGAGCAACTCAATAGACATTATGTTCAGGTACAAGGAAGAGATCGCTTGGTTTTACAATACATAGGACAGCAGCTAGGTCTAGATGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGGACGAGGTTATGGCCCTACCAGAGGATTTGAAGACAAAACTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACCAATCAAAGAGACAAAAACCTTGCTAAGGTTACTGGATATGATTCCAACAATAGAAGGTTTGGTGAAAGAAATTCAGAGTCCAGCACAATGTCAGTGAATCAGGGAGCAATCAATCAACTTTCGGACCAAATTTCTGCCCTCAATGATAGAATGGATGAGTTTACAAATCGCATTGAAGAGCTGAATTCCAAATTAAACACCAAGAGAAATTCTCCAAGCCAACAGAATATGTCACTTCAAACTGAGACTTGCAATGGATCAGCTCCCACCTCATACTTCATCACTAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGGCAAATTCCTCTTCATCATCACAGTTAAATAAGGATTCTCCTTTAATGGAAGAGATATCAAGCATTGCACGCAGTCAGCGTCAGATCATGCATCAATTGGACAATCTCAATAATCTTCTCAGGGGTAGCTCAGGGGAGAAGTCTCAACAAACAAGAACTAACCGGAGAAACATGGATACGACAGCAGATTCCATGGGAACCTCTGTTATGGCAGTGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTGTTGAACCGTAATTGA 2073 0.412 MVAVVCVVAELTVTARSGRRLETGNCSMGKEISDSDSHHKRLGLLKDQVHLVKRKDCDRHEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIVLVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLRDLKEGKPVQVPIYDFKSSSRTGYRTVEAPTSHIVFIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSAKNLAVDQIKAVLSEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLQYIGQQLGLDGSYIPRTYIEQIQIEKLVDEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYDSNNRRFGERNSESSTMSVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLNTKRNSPSQQNMSLQTETCNGSAPTSYFITSLGNGSLTGSKMANSSSSSQLNKDSPLMEEISSIARSQRQIMHQLDNLNNLLRGSSGEKSQQTRTNRRNMDTTADSMGTSVMAVVAVGCLGIFLMKGLLNRN 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9672g00003 690 CDD UMPK_like 94 266 - -
Vium9672g00003 690 MobiDBLite consensus disorder prediction 558 578 - -
Vium9672g00003 690 ProSiteProfiles CYTH domain profile. 275 437 IPR023577 -
Vium9672g00003 690 MobiDBLite consensus disorder prediction 505 525 - -
Vium9672g00003 690 MobiDBLite consensus disorder prediction 556 578 - -
Vium9672g00003 690 SUPERFAMILY CYTH-like phosphatases 294 434 IPR033469 -
Vium9672g00003 690 PRINTS Uridine kinase signature 251 264 - -
Vium9672g00003 690 PRINTS Uridine kinase signature 215 225 - -
Vium9672g00003 690 PRINTS Uridine kinase signature 159 174 - -
Vium9672g00003 690 PRINTS Uridine kinase signature 92 109 - -
Vium9672g00003 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 263 IPR027417 -
Vium9672g00003 690 Pfam Phosphoribulokinase / Uridine kinase family 95 263 IPR006083 GO:0005524|GO:0016301
Vium9672g00003 690 Pfam CYTH domain 280 431 IPR023577 -
Vium9672g00003 690 PANTHER URIDINE KINASE 45 450 - -
Vium9672g00003 690 MobiDBLite consensus disorder prediction 639 661 - -
Vium9672g00003 690 Gene3D - 93 294 IPR027417 -
Vium9672g00003 690 Coils Coil 530 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9672g00003 Vium-Chr9672 20040 33261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9672g00003 94 263 PRT Gene Family AT5G40870 28.177 5.97e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9672g00003 K00876 - gmx:100797542 1181.39