Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9660g00002 ATGGGACAATGTTTGAGCTTCTGCTGCTTTAAGCATACAGCTTCGTCTCAGCAACAGTATCCAACTGTGATAGAAGAGCTATGCCCTCAATTTTCTCTAGCCGAACTTAGGAAATGGACAAACAACTTTGACGAAAACCAAATAATTGGAATTGGAGGCCTTGGCGTTGTATATAAAGGCTCTCTCCGAAACAGTTGTGCTACTGAGTGTACAATTGCAATCAAGCGAATACATGCGATTACTGAGAAGGAACTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGCTTCGCCATCCAAATTTGGTCACTCTGTTAGGATTTTGTGACCACAGAGACGAGAAGAATATTGTATATGAGTACATGACCAATGGATCTCTCCGTGATGTCCTATATTGTAGTGATATGAAAAAGAAGCCACTAACATGGAAGCAGAGGCTAAACATCTGCATAGGAGTAGCGAAGGCACTACACTACCTTCACACAGGTCTCAAGAGAACAGTCTTTCATCGTAACGTAATACCTTATAATATTCTTTTGGATAGCAACATGGAGGCAAAACTCTCAGACTTCCGACTTTGCTTAACAGGACCACATCATGCATCAAAGCCAAAACCAAAGACAATAACAAAAGATGGCTTTTCAGGTACGTATGGTTACGAGGCTCCTGAGATTTCAGAAAACAATACATTAACAGAAAAATGCGATGTTTACTCCTTTGGTGTAGTTATACTAGAAGTGGTATGCAAAGAGAAGCTAAACAGTGTTGAGAAGAGGCAGAAACACCCTGTTGAGGAGAATATTGATCCAAATATTAAAGGAAAGATTGCACCAGAGAGTTGGGAAGTATTTATAAACATCACAGAAAGATGCTTGAACTTTGATCCAAATGAGCGACCATCAATGGGTGAAGTGGAGGTTCAACTTGAGCTTGCTCTGTCACTGCAGGAAGAAGCAGATATAAGAAATAGCTGTGATGCTTATACCCTATTATCTATGACCATTATTAGTTAA 1017 0.4002 MGQCLSFCCFKHTASSQQQYPTVIEELCPQFSLAELRKWTNNFDENQIIGIGGLGVVYKGSLRNSCATECTIAIKRIHAITEKELKQFKNEIELLCQLRHPNLVTLLGFCDHRDEKNIVYEYMTNGSLRDVLYCSDMKKKPLTWKQRLNICIGVAKALHYLHTGLKRTVFHRNVIPYNILLDSNMEAKLSDFRLCLTGPHHASKPKPKTITKDGFSGTYGYEAPEISENNTLTEKCDVYSFGVVILEVVCKEKLNSVEKRQKHPVEENIDPNIKGKIAPESWEVFINITERCLNFDPNERPSMGEVEVQLELALSLQEEADIRNSCDAYTLLSMTIIS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9660g00002 338 Gene3D Phosphorylase Kinase; domain 1 5 122 - -
Vium9660g00002 338 FunFam Receptor-like protein kinase ANXUR2 123 332 - -
Vium9660g00002 338 PANTHER OS07G0166700 PROTEIN 28 317 IPR045272 GO:0004714|GO:0006468
Vium9660g00002 338 Pfam Protein tyrosine and serine/threonine kinase 46 309 IPR001245 GO:0004672|GO:0006468
Vium9660g00002 338 FunFam Receptor-like protein kinase ANXUR2 8 122 - -
Vium9660g00002 338 ProSiteProfiles Protein kinase domain profile. 43 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9660g00002 338 SUPERFAMILY Protein kinase-like (PK-like) 17 314 IPR011009 -
Vium9660g00002 338 Gene3D Transferase(Phosphotransferase) domain 1 123 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9660g00002 Vium-Chr9660 1764 3186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9660g00002 7 324 Receptor kinase-like Gene Family AT5G39000 40.597 4.97e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium9660g00002 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9660g00002 - - gmx:100779112 524.628