Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium965g00001 ATGGAGCCAGAGAATCACAAAACGAAGGCAGTGAACGTGCTTCGAAGCAGAATCTGCGACCCCAAATTCATATTCAACAACGATTATCCAGACAGCAACTACAGCAAACTGAAATTCATGATATCGAGTTCGGTGACGGAAGCGTGCAACAATTCTATTCTGCTACTCGGTCCGCGCGGCTCCGGAAAGAACGCGGTTTTGGAAGTTGTCATTCAAGATTTGCTGCAAGAGTATCCAGACTCGATTTCTGTGATACGGTTGAATGGCCTTTTACATAGCGACGACATCTCTGCATTCAAGGAAATAGCTAGGCAGTTGTGCATGGAGCATCAATTGCTATTCTCAAAAGCGGCATCATTTGATGACAACTCCCAGTTTATGGTTGCCATTCTAAAGGAATGTGGATTAGCACATAAAACAGTGATATTTGTTCTGGAAGAGTTTGACTTGTTTGCTCAGGGTAAACAGCGGTTACTTTATAGTTTGTTAGATGCAATGCAATCAATTACATCACAGGCTGTTGTACTTGGCATTAGTTGCCGTTTGGATGCAGATCAACTATTGGAGAAAAGAGTACGATCTCGGTTTTCCCATAGAAAGCTGTTGTTCTTACCACCTTCAATGGAAGATTCACAGAAGTTACTAATGCACATGCTGACATTACCAATCGATTCAAGCTTTCCGCATGATTATGCTACTGAGTTTAACACGAAGGTCCAAAATATTATAGGAGATAGAAAGTTCAAAGAAACCCTACAAAAGTATTTAAATGTTGATTCCTCTGTCAAACATTTGCTGAGGTTCCTATTCTGTGCAGTCTCTCATATAGATTTGCAGACTGGGTTCTTGTCTCAGGAGAGCTTTGAAATTGCTTTTTTAAGCATCCAAAGACAACCGAAACTAGAGTGTTTAAGAAATTGCTCCAATTTAGAACTTCATATTCTGGTTTGCATGAAGAGATTGGAAGTTAAAGAGAAAAGTTTATGCAATTTCAATTCTGTAATGAAAGAGTATAAAACTATGCATGATTCCTTCCGAACTTCTGAATATTATTCGAGAAGTGTCTGCTTACGGGCATTTGAACACCTTCTACATCTTGAGATGATATGTTTCACAGACAATAGAGGACAGAATTTGTCTGTTGAATTCCGTCCTGTAAAGCTTTTAATTTCATCTGCTGAACTACATCAGGGACTGAGAGCGTATAATTCATGCCCTGCTTACCTTATAAAGTTAATGGATCGTGAAGGCTAA 1254 0.3947 MEPENHKTKAVNVLRSRICDPKFIFNNDYPDSNYSKLKFMISSSVTEACNNSILLLGPRGSGKNAVLEVVIQDLLQEYPDSISVIRLNGLLHSDDISAFKEIARQLCMEHQLLFSKAASFDDNSQFMVAILKECGLAHKTVIFVLEEFDLFAQGKQRLLYSLLDAMQSITSQAVVLGISCRLDADQLLEKRVRSRFSHRKLLFLPPSMEDSQKLLMHMLTLPIDSSFPHDYATEFNTKVQNIIGDRKFKETLQKYLNVDSSVKHLLRFLFCAVSHIDLQTGFLSQESFEIAFLSIQRQPKLECLRNCSNLELHILVCMKRLEVKEKSLCNFNSVMKEYKTMHDSFRTSEYYSRSVCLRAFEHLLHLEMICFTDNRGQNLSVEFRPVKLLISSAELHQGLRAYNSCPAYLIKLMDREG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium965g00001 417 FunFam Origin of replication complex subunit 4 31 205 - -
Vium965g00001 417 PIRSF ORC4 3 417 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vium965g00001 417 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 8 416 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vium965g00001 417 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 214 397 IPR032705 -
Vium965g00001 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 257 IPR027417 -
Vium965g00001 417 Pfam AAA ATPase domain 35 168 IPR041664 -
Vium965g00001 417 Gene3D - 31 205 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium965g00001 1 414 Core DNA Replication Machinery Family AT2G01120 62.648 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium965g00001 K02606 - gmx:100800582 723.005