Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9646g00004 ATGGCGGACTCCGACAACGACTCCGGCGGCACGCACAACGCCGGCAAGGGCAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTTCTGCCGATCGCAAACGTGAGTCGCATCATGAAGAAGGCGCTTCCGGCGAACGCAAAGATCTCGAAGGACGCGAAGGAGACGGTTCAGGAGTGTGTGTCGGAATTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAAAAGCGAAAGACGATCAACGGCGACGATCTTCTTTGGGCGATGACGACTCTGGGCTTCGAGGACTACGTGGAGCCTCTGAAGGTCTACCTTCAGCGCTTTAGAGAAATGGAAGGAGAGAAGACCGTGGCGGCGCGTGACAAAGACGCGCCTCCTGCTTCCAATGCTACCAACAGTGCCTACGAGAGTGGTAGTTATGGTGCTGGTGGGATCATGATGCATCAGGGACACGTGTACGGTTCTGGTGGGTTCCATCAAGTGGGTGGCAGTGTTATTAAGGGTGGGCCTGCGTATCCTGGGCCTGGTTCCAATGCGAGTCGGCCTAGATAG 561 0.5811 MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTVAARDKDAPPASNATNSAYESGSYGAGGIMMHQGHVYGSGGFHQVGGSVIKGGPAYPGPGSNASRPR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9646g00004 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Vium9646g00004 186 MobiDBLite consensus disorder prediction 1 26 - -
Vium9646g00004 186 Gene3D Histone, subunit A 16 141 IPR009072 GO:0046982
Vium9646g00004 186 MobiDBLite consensus disorder prediction 1 15 - -
Vium9646g00004 186 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vium9646g00004 186 MobiDBLite consensus disorder prediction 119 138 - -
Vium9646g00004 186 SUPERFAMILY Histone-fold 25 131 IPR009072 GO:0046982
Vium9646g00004 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vium9646g00004 186 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Vium9646g00004 186 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vium9646g00004 186 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vium9646g00004 186 FunFam Nuclear transcription factor Y subunit B-3 17 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9646g00004 Vium-Chr9646 16807 18305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9646g00004 1 156 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.698 5.67e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vium9646g00004 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9646g00004 K08065 - gmx:100813580 345.895