Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9642g00001 ATGGATACTTACAACGGCATAAATGCTACTTCAGAATTTGACATGACATTTTCGGACACTATTGAACATTACATGGTTCACGATGGTTTGAACGACAACAACAATGTGTTTGTCTCGAATGAGGATTGGTTCTCGGAGAAAGTTGATAAAGCAGAAGAGGTAGTTCGGAGAGGGACGAGGTACAAAGGAGTGCGGCGTAGGGCACATGGAAAGTTTGCTGCAGAGATAAAAGATCCAAACAAAAGTAATAGGGTTTGGCTTGGGACTTATGACACTGAAGAAGAAGCTGCTTTGGCTTATGACAATGCAGCTTTCAAGATTAGAGGCTCCAAAGCCAAGCTGAACTTTCCTCACCTCATTCCACCGTTGGATGAACCAACCACCACCATCGATCAATCTCCTTCTTCTTCATCATCCACGTCTCAGGATCCTTCCAAGAAAAGGAAGGGTCTGGCTGGTTTGCTCAATAAATTAGCACATGAAAAAAACAGAATTTGA 498 0.4277 MDTYNGINATSEFDMTFSDTIEHYMVHDGLNDNNNVFVSNEDWFSEKVDKAEEVVRRGTRYKGVRRRAHGKFAAEIKDPNKSNRVWLGTYDTEEEAALAYDNAAFKIRGSKAKLNFPHLIPPLDEPTTTIDQSPSSSSSTSQDPSKKRKGLAGLLNKLAHEKNRI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9642g00001 165 Gene3D AP2/ERF domain 59 118 IPR036955 GO:0003700|GO:0006355
Vium9642g00001 165 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 CDD AP2 59 119 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 MobiDBLite consensus disorder prediction 126 146 - -
Vium9642g00001 165 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 MobiDBLite consensus disorder prediction 118 165 - -
Vium9642g00001 165 Coils Coil 163 165 - -
Vium9642g00001 165 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Vium9642g00001 165 PANTHER DNA-BINDING DOMAIN 47 146 IPR044808 GO:0003700|GO:0009873
Vium9642g00001 165 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Vium9642g00001 165 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9642g00001 Vium-Chr9642 9508 10062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9642g00001 56 120 AP2-EREBP Transcription Factor Family AT2G44840 71.212 9.04e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium9642g00001 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9642g00001 K09286 - pvu:PHAVU_008G046500g 197.208