Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9641g00003 ATGCAGCTGATGTGGCAATTGCAATCACATACCATTTTAAAAATCCTCGATTCATGCAGTCATGAATCCGGACTGTTAGGGAATAACTTTTTAGCGCTGTGTGCAAGTGGTTACTATGATGGGACTGTATTTCACCGCAACATCAAGGGTTTTATGATTCAAGGTGGAGATCCCACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAATGACGAGATACGAGAATCACTGAAGCATAATGCTAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAACGGAAGTCAGTTCTTCATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTCGAAGTTCTTGATCTCATGGAAAAGACTCAAACTGGAGCAGGAGATCGACCACTTGCAGAGATAAGGCTCAATCGTGTAACAATACACGCTAATCCTCTTGCTGGTTGA 489 0.4213 MQLMWQLQSHTILKILDSCSHESGLLGNNFLALCASGYYDGTVFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9641g00003 162 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 39 56 IPR020892 GO:0003755|GO:0006457
Vium9641g00003 162 Gene3D - 24 162 IPR029000 -
Vium9641g00003 162 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 28 155 IPR044666 -
Vium9641g00003 162 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 28 154 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 28 155 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 44 56 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 87 102 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Vium9641g00003 162 SUPERFAMILY Cyclophilin-like 28 159 IPR029000 -
Vium9641g00003 162 CDD Cyclophilin_PPIL3_like 29 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9641g00003 Vium-Chr9641 14067 16518 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9641g00003 29 159 U-box Gene Family AT5G67530 55.725 4.70e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9641g00003 K12734 - nnu:104611869 272.707