Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium963g00001 ATGAATGAGGAGGATAATCTTAATACCCTTTTAAGCAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCGAGACTTGGGTTCCAATCAAACCTTAACATCAAGCAGTTGATGACTGCTACAGCTGAGCTTGCAGTTCTCTGTATGAAATGTCCACAAGAATCGAGGCCAAACATGGAACAGGTGCTAGAGATTCTCAATGAAATGAAGCAAGGGAGATATGTAACAACCTCTCGCTCAACTAAAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACAATTTTGGCACCTGCCTTGGTAAGGGAGGGTATGGCAGCGTATACTATGGAAAACTTAAAGATGGACTAGAGGTTGCAATAAAATGTTTCCATGACGAGAATGAGACAGAAGAGACCATTAAGCAATTCATGAAAGAATCTGATATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTCTATGGCCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTACATCTCCAATGGCACACTTTCCAAACATCTTCATGAGTCTTCCGGTGATAAACTACCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATTTCTTCATGACTCAAGTGTCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCTGATTTTGGATTCTCACGGTCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTAGGAACTCGTGCTTATATAGATCCTGACTACTATATATCTGGAAGGGTCAGTAACAAAAGTGATGTATATAGTTTTGGAGTGGTCTTGTTTGAACTCATATCATCTATCCACCCAAGTTTTGTTGCAGGCACAGATAATGAGACTCTGGCACAGTTTGCAAAGAGAAAAATTTTGAACAATGAATTAAACGAGATAGTTGATGAAAGCTTTTCCTGTGGTTCTGACGATAACATTTTGGAAATGATATCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTGCTAGAGACCTTGGAAGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACGTAG 1155 0.4017 MNEEDNLNTLLSRKIENKTLVELFDPRLGFQSNLNIKQLMTATAELAVLCMKCPQESRPNMEQVLEILNEMKQGRYVTTSRSTKALKIFHHAELEEATNNFGTCLGKGGYGSVYYGKLKDGLEVAIKCFHDENETEETIKQFMKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHESSGDKLPWQTRLNIAIETATALVFLHDSSVIHRDVKGSNILLDENFTVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYISGRVSNKSDVYSFGVVLFELISSIHPSFVAGTDNETLAQFAKRKILNNELNEIVDESFSCGSDDNILEMISAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium963g00001 384 Gene3D Phosphorylase Kinase; domain 1 105 178 - -
Vium963g00001 384 Gene3D Transferase(Phosphotransferase) domain 1 179 380 - -
Vium963g00001 384 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Vium963g00001 384 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Vium963g00001 384 SMART serkin_6 99 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium963g00001 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vium963g00001 384 FunFam Wall-associated receptor kinase 3 178 384 - -
Vium963g00001 384 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 4 75 IPR044652 GO:0004672
Vium963g00001 384 Pfam Protein tyrosine and serine/threonine kinase 101 370 IPR001245 GO:0004672|GO:0006468
Vium963g00001 384 SUPERFAMILY Protein kinase-like (PK-like) 83 374 IPR011009 -
Vium963g00001 384 ProSiteProfiles Protein kinase domain profile. 99 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium963g00001 Vium-Chr963 7 1852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium963g00001 4 72 Receptor kinase-like Gene Family AT1G25390 37.681 2.63e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium963g00001 PK_Tyr_Ser-Thr 5.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium963g00001 - - vum:124824351 764.607