Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9630g00002 ATGCAGTCACAGCATTACTACTACAATGTGGTTAGGTTGAACAACCAACACACCACGGTGGAGCCTGGTGATACTTTCAATTTCGACATCAAAGTTATATATCACACAGTCCACACAATTCCACAAGGATTACGGAATCGATTTTCTCCATTATCAATATCTTGTCGTGAATTCGTCCAAGAAGGGCAAAATTTCTTAGGGTCACTGTTGTCGGGCTTAAGTTTCTCCATTGAGTCGATTGCTGAAATATCAGAAAGCGTTGTTTCTACAGTTCAAGAATTGTTTGAAGATAGTAGCATTGTTTCGGAATCTCAGCACCGAATCATCCCCTTAAGTTTGACAATTATAATAGTGGATCCTGCTGGAATCGATGGAGTTATGGAAGAATCGAGGACGTTTCCCGGAATGAACCACTCCAATGAGACCATATTAAAGACATTCTTGAAGAAACGTACGGATACGGAAGGGAGTGAAGAATGTTGTATCTGCTTAGAAGGGTTGAATATCAACTGCAAGAGCTGCACAATGCCATGCCATCATGCGTTTCATCAACAGTGTATTCTCAAATGGCTCAAAACTAAACGTGTGTGTCCCTTGTGTCGTTATCCTTTGCCAACTCCAGAAAATTAG 630 0.4095 MQSQHYYYNVVRLNNQHTTVEPGDTFNFDIKVIYHTVHTIPQGLRNRFSPLSISCREFVQEGQNFLGSLLSGLSFSIESIAEISESVVSTVQELFEDSSIVSESQHRIIPLSLTIIIVDPAGIDGVMEESRTFPGMNHSNETILKTFLKKRTDTEGSEECCICLEGLNINCKSCTMPCHHAFHQQCILKWLKTKRVCPLCRYPLPTPEN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9630g00002 209 SUPERFAMILY RING/U-box 150 207 - -
Vium9630g00002 209 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Vium9630g00002 209 Pfam Ring finger domain 159 201 IPR001841 -
Vium9630g00002 209 SMART ring_2 160 200 IPR001841 -
Vium9630g00002 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 206 IPR013083 -
Vium9630g00002 209 PANTHER TARGET OF ERK KINASE MPK-1 137 208 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9630g00002 139 205 C3H Transcription Factor Family AT1G18760 39.130 1.12e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9630g00002 - - pvu:PHAVU_006G017900g 239.965