Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9615g00002 ATGGAAATTCAGTTCCAACATCCAAAGCAACAGTTGAGACCAAAAGGGAGAAAGAACAAAAGCAAGAACAAGTATGTTGGAGTGAGGCAAAGGGCATCAGGGAAATGGGTTGCAGAGATCAAAGAAACAACACAGAAGATAAGAATGTGGCTTGGCACATACGAGACTGCAGAAGAAGCAGCCAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCTCTGATTCCCCTCTTGCTTCAAGGATTCAGAACCTTCTCAGCAACAGAAAAGGCATCAAAGAACAAGAACAACATGCGGAAACCTCTGCCACCACAAGGGTCAACACCAACCAACAACATGATTTGAGTCTATCAGAAGAAGGAGTTTCTACCCTACAATATGAGGAGCCAAAGTTCCAATCTTTGCCGGAACAAGTGTCTATATTCAGTGCTCTCCAACAAGATTGTTGCCAAAAGAAGACACGTGTGAGAGATCAGAAGAAAAAAAGGGTTACCATCACATCAAGTAGTGGTAGTAGTACTGACACAAGCATTAGTGACACAAGTGAGAACTCGCTTTGTAGTGAGACAAAAACCCAGAACACAGAACTGTTTGATGATGATTATAGACCCGATTTGAGCAATTTCATGGGGTCTGAATCAGGTTCTGGGAAAAATCCTTCATGGGGTTGTGAAGTTTTTTGTGATGATTTTCCCTTTGGCCAAGTAATGGATGTAGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGAGTTTGAAAGGATGAAGGTTGAAAGGCAAATTTCAGCTTCACTTTATGCAATGAATGGTGTGCAAGAGTACATGAACACTGTTCAGGACTCTAATAACACTGAAGCTACGTGGAATCTTCCTCCCTTGTCCTCTTTTTTGTGTTAG 936 0.4316 MEIQFQHPKQQLRPKGRKNKSKNKYVGVRQRASGKWVAEIKETTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSSDSPLASRIQNLLSNRKGIKEQEQHAETSATTRVNTNQQHDLSLSEEGVSTLQYEEPKFQSLPEQVSIFSALQQDCCQKKTRVRDQKKKRVTITSSSGSSTDTSISDTSENSLCSETKTQNTELFDDDYRPDLSNFMGSESGSGKNPSWGCEVFCDDFPFGQVMDVANLPDIAGLELPEFERMKVERQISASLYAMNGVQEYMNTVQDSNNTEATWNLPPLSSFLC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9615g00002 311 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Vium9615g00002 311 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 274 - -
Vium9615g00002 311 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677
Vium9615g00002 311 MobiDBLite consensus disorder prediction 177 200 - -
Vium9615g00002 311 MobiDBLite consensus disorder prediction 113 127 - -
Vium9615g00002 311 MobiDBLite consensus disorder prediction 172 200 - -
Vium9615g00002 311 MobiDBLite consensus disorder prediction 106 127 - -
Vium9615g00002 311 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Vium9615g00002 311 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Vium9615g00002 311 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Vium9615g00002 311 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Vium9615g00002 311 MobiDBLite consensus disorder prediction 11 25 - -
Vium9615g00002 311 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Vium9615g00002 311 MobiDBLite consensus disorder prediction 1 25 - -
Vium9615g00002 311 CDD AP2 24 80 IPR001471 GO:0003700|GO:0006355
Vium9615g00002 311 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9615g00002 Vium-Chr9615 16972 18196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9615g00002 8 98 AP2-EREBP Transcription Factor Family AT5G19790 71.429 1.44e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium9615g00002 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9615g00002 K09286 - gmx:100792432 369.777