Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9611g00004 ATGAATAAATCAGAGGGGACTCGGCAGCGGCAACAGCAACAACAGCAGCAGCATGTGATGGGAGTTGCTGCAGGTGCTAACCAAATGACCTATTCTCACTACCAGACTGCTCCCGTAGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGTTCTGCACACCAGCTTGCTTACCAGCAAGCTCAACATTTCCACCATCAACAACTGCAGCACCAACAGCAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGAGCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATTAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCTCTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTACCTCCACAGCACCCTGTGGGACCTCCTGGGATGATAATGGGAAAGCCAGTTGATCAAGCAGCGCTATATCCTACACAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCTCAGCCACAGCAACCACCCCAACAACAACAAACAGATTCATGA 810 0.4543 MNKSEGTRQRQQQQQQQHVMGVAAGANQMTYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQLQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKASIPLVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYPTQQPRPTMAFMPWPHTQPQPQQPPQQQQTDS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9611g00004 269 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Vium9611g00004 269 MobiDBLite consensus disorder prediction 1 20 - -
Vium9611g00004 269 SUPERFAMILY Histone-fold 66 179 IPR009072 GO:0046982
Vium9611g00004 269 MobiDBLite consensus disorder prediction 241 269 - -
Vium9611g00004 269 Pfam Core histone H2A/H2B/H3/H4 71 170 IPR007125 GO:0003677
Vium9611g00004 269 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 62 254 - -
Vium9611g00004 269 FunFam Nuclear transcription factor Y subunit gamma 72 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9611g00004 Vium-Chr9611 53558 56559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9611g00004 86 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 4.20e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vium9611g00004 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9611g00004 K08066 - gmx:100796987 400.593