Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9611g00002 ATGGAATCTAGAGTTGATGAATGGCACCAGTCTCGATCACAGCCAGTGGTGCAGGACCATTTGGATGGCACACATACCCATAGAAGACTAGTTGACTTTAATACATCAGAAGTTAAACCTGTACTTAATTACTCTATACAGACAGGTGAAGAATTTGCTCTTGAGTTTATGAGAGATAAGGTGAATATGAGTAAGCCTGTATTATCAAATGTTAGTGATTCGAATTATACCCCAGGTTATATGGAACTAAAAGGCATTTTAGGTATCAAACATGCAGGATCTGAAAGTGGATCTGATATCTCTATGTTCTCAATGGCTGAGAAATATCCAAAAGAATTTGATACAACGAGTACATCTTTACCTGGAGACAGAATCAACTATGGGTCTATTCAATCAATGCCAAGAACTTCATTGAATCAGGATAATAGACAATTTGTGCCTGGGTATGGCTCTTTTGGAGCTTATGATAGATCAATGATCATTAAGTTTCTTTGCAGCTTTGGCGGTAAAATATTGCCACGACCATGCGATGGAAATCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGACTAAGAAAGGACATATCTTGGCTGGAGCTCATGCAGACAGCATTTCAAATCTATAGTCAGGTTTATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACAAGATAGGGAAGGATCACAAAAACCTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAGGATGCTCAATTTGGTCTCAGCAGTATGGGTGATGATTCTGAGATTCAGTATGTTGTTGCCGTTAATGGCATGGACTTAGGATCAAGAAAAAACACTACAATGATTGGTGTCAGCGTTTCTGCAAATGACATAAATGAATTGAACAGGCAAAGTATTGACAGGGAGACTAATAATAGAGTTGGTATAGAATGTATTGTACAAGGAAATCCTCCCCCAACTAACAATTTTGACTCATCATTGGCTTCTCAATTTTCACCATCAGTGCTACCAACTTCCTCAAATTCATATGAAAAGTATCCACTGTTTTATAGTGATCAAATGATGTGCCATGGCAAACTTAGTGATCAATACTTTATTAATGAAGGCCTTGATCTTTGTCATAAACCTGTTATTGGAGAGACCCCGATGATTATGCCTCCCCATATGCTTGTCAATCAACAAGGGATTTTAAATGAAGGCCTTCCTCCTCGAGGAATACAAGTACAAAATTCAGAAATACCAACAACATTGGCAAACAAGATGGTTACTAGTTCAATTCCACAAGTAAGTGACCCTGGGAAAGTTTTGGCATCAGAATTACCATCACCCGCTCCTGCTCAACTGCTTAATGGTTACATGAAAAATAATTTTCCTGAAGCATCTGTTGTAGTTACTGTGTCAGAGGGGTTTCCATTGCATCCACCAAGCGTGAACAAGGGCCAAGATTATGAAGAAACTTCTTCTACAAGCAGTGCATTTGGTCCTACTTATGTTGATTCCCACTCCAATGCTTCTGACTTGAGTTCCCTTCATCCTCCTCCTCTTCCTAAGAGAGTTTACTATTCAGAGAGAATTCCACGCGAACAAGTAGAGTTGCTGAACCGGTCCTCAAAATCTGATGATACACACAGCTCTCAGTTTCATGTTCCAGATTTACTCTCTGATATCAACCCACCACATTCAGTTACAGAATCTGTTGACAAGTTGCATGATGGAAATCTGTCTGATCTAAATGAGGAATTAAGCATCATAGGAAATCCGTTGCATGCAAATGTATTTGCAGTTGAAAATGGGATTGTCAATAATCAAATCTACAAACAGCCGCCTGATGCAAACACTCAGATAAAATCAAAGCTAACTGAGCATGTGAATCCTGAGCTGAGGCAGGTATTATTGGACAATGAAGGACACACAGATGTGTTAAATAAAGATAATGTTGTTGGGTTGGAAATGAAAATTAATGGTAACAATAGCTATAACAAACCCCTGATTGATGAGACAAAAGCCAGTAAACCTGACTTGCAGAATTTGCACCAGGTTTCTTCTGGTAAGATTCTTAATGATCCTGCATCCACTCTTCCAGAGGTTGACTGGGGTGATACCTCTGTGAAAGAGTCTAATGACAATGTTAATGTGCAAGCCTTACCTGTATCTCTAAATGGGAATATTGATGATGATTCTGAAGAATTTCCTTCTGATGTCATTATGAACCAAGCACATGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGACCCCTCTAGTTTCCATCAATTAACTTCAAATGGAGTGGGCTTAAGCGTAAACATGGAAAATTGTGATCCTAAACGATGGTCGTATTTTCAAAAATTGGCTCAAGCAGGCACTGATAATGTGTCTCTTATTGACCAAGATCATCTTGGGTTTGCACCTGCAATAGGAAAAGTGGTTGGAGATGATAGAGCTCAACATGTTACACCTTTAACAACTGATGAAGTTTCTCTGAACCATGCAGAGTCCCACCTTGATTTTGTTGAAGAAAATTTGCTTGGAAGAACTGGAGGAGAAAGAAAGTCTAACTATGATCATTCCCAAGTGAATGACATTGAAAGCATGCAATTTGATGCCATGATGGAAAACATAAGAGCTCAAGAGTCAGAATGCGAGGTTGGGATGTTTGAAAAAAGGAATAACAATCTACATCCTCCTGATCCTTCTTTGGAAGAGATTGATACGAGTTCTTTGCAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCAGGTACCTTTGGCACCGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCCATCAAAAGAATAAAAAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCTGATATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGGAGGATGGACCCGGAGGAACAATGGCTACTGTTACAGAGTACATGGTGGATGGTTCTCTTAGGCATGTGTTACTTCGCAAGGATAGGTATCTTGATTTTCGTAAGAGACTGATAATTGCGATGGACGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTACACTTTGACCTAAAATGTGACAATTTGCTGGTGAACTTGAAAGATCCTATGCGGCCTATTTGCAAGGTTGGGGATTTTGGATTATCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGAGGGGGACTCTTCCTTGGATGGCGCCAGAGCTTCTGAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTTTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGACCAACAATACCAAATCATTGTGATTCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCGGCTAGGCCCTCCTTCACAGAAATAGCTCGTCGATTGCGCATAATGTCTGCAGCTGCTAAATCATCGGGCCAAAAAGCATCTAGATGA 3693 0.3989 MESRVDEWHQSRSQPVVQDHLDGTHTHRRLVDFNTSEVKPVLNYSIQTGEEFALEFMRDKVNMSKPVLSNVSDSNYTPGYMELKGILGIKHAGSESGSDISMFSMAEKYPKEFDTTSTSLPGDRINYGSIQSMPRTSLNQDNRQFVPGYGSFGAYDRSMIIKFLCSFGGKILPRPCDGNLRYVGGQTRILRLRKDISWLELMQTAFQIYSQVYAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLQDREGSQKPRMFLFSMSDLEDAQFGLSSMGDDSEIQYVVAVNGMDLGSRKNTTMIGVSVSANDINELNRQSIDRETNNRVGIECIVQGNPPPTNNFDSSLASQFSPSVLPTSSNSYEKYPLFYSDQMMCHGKLSDQYFINEGLDLCHKPVIGETPMIMPPHMLVNQQGILNEGLPPRGIQVQNSEIPTTLANKMVTSSIPQVSDPGKVLASELPSPAPAQLLNGYMKNNFPEASVVVTVSEGFPLHPPSVNKGQDYEETSSTSSAFGPTYVDSHSNASDLSSLHPPPLPKRVYYSERIPREQVELLNRSSKSDDTHSSQFHVPDLLSDINPPHSVTESVDKLHDGNLSDLNEELSIIGNPLHANVFAVENGIVNNQIYKQPPDANTQIKSKLTEHVNPELRQVLLDNEGHTDVLNKDNVVGLEMKINGNNSYNKPLIDETKASKPDLQNLHQVSSGKILNDPASTLPEVDWGDTSVKESNDNVNVQALPVSLNGNIDDDSEEFPSDVIMNQAHGDILIDINDRFPREFFTDIFSKAVLEEDPSSFHQLTSNGVGLSVNMENCDPKRWSYFQKLAQAGTDNVSLIDQDHLGFAPAIGKVVGDDRAQHVTPLTTDEVSLNHAESHLDFVEENLLGRTGGERKSNYDHSQVNDIESMQFDAMMENIRAQESECEVGMFEKRNNNLHPPDPSLEEIDTSSLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVEDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDFRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDSEWRTLMEQCWAPNPAARPSFTEIARRLRIMSAAAKSSGQKASR 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9611g00002 1230 Gene3D - 181 261 - -
Vium9611g00002 1230 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 180 262 - -
Vium9611g00002 1230 MobiDBLite consensus disorder prediction 553 586 - -
Vium9611g00002 1230 Gene3D Phosphorylase Kinase; domain 1 944 1038 - -
Vium9611g00002 1230 SMART serkin_6 951 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9611g00002 1230 ProSitePatterns Protein kinases ATP-binding region signature. 957 982 IPR017441 GO:0005524
Vium9611g00002 1230 SUPERFAMILY CAD & PB1 domains 177 264 - -
Vium9611g00002 1230 Gene3D Transferase(Phosphotransferase) domain 1 1039 1230 - -
Vium9611g00002 1230 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 944 1038 - -
Vium9611g00002 1230 SMART PB1_new 175 262 IPR000270 GO:0005515
Vium9611g00002 1230 Pfam Protein tyrosine and serine/threonine kinase 952 1214 IPR001245 GO:0004672|GO:0006468
Vium9611g00002 1230 Pfam PB1 domain 177 260 IPR000270 GO:0005515
Vium9611g00002 1230 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1039 1230 - -
Vium9611g00002 1230 MobiDBLite consensus disorder prediction 499 528 - -
Vium9611g00002 1230 PRINTS Tyrosine kinase catalytic domain signature 1070 1088 IPR001245 GO:0004672|GO:0006468
Vium9611g00002 1230 PRINTS Tyrosine kinase catalytic domain signature 1141 1163 IPR001245 GO:0004672|GO:0006468
Vium9611g00002 1230 PRINTS Tyrosine kinase catalytic domain signature 1033 1046 IPR001245 GO:0004672|GO:0006468
Vium9611g00002 1230 PRINTS Tyrosine kinase catalytic domain signature 1185 1207 IPR001245 GO:0004672|GO:0006468
Vium9611g00002 1230 MobiDBLite consensus disorder prediction 493 534 - -
Vium9611g00002 1230 ProSiteProfiles Protein kinase domain profile. 951 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9611g00002 1230 CDD STKc_MAP3K-like 957 1214 - -
Vium9611g00002 1230 PANTHER SERINE-THREONINE PROTEIN KINASE 205 1215 - -
Vium9611g00002 1230 SUPERFAMILY Protein kinase-like (PK-like) 934 1214 IPR011009 -
Vium9611g00002 1230 CDD PB1_UP2 164 260 - -
Vium9611g00002 1230 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1076 1088 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9611g00002 Vium-Chr9611 10610 26099 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9611g00002 34 566 MAP Kinase Kinase Kinase AT1G16270 38.550 1.00e-84 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium9611g00002 PK_Tyr_Ser-Thr 1.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9611g00002 - - gmx:100799639 2007.26