Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9611g00001 ATGGAATCTAGAGTTGATGAATGGCACCAGTCTCGATCACAGCCAGTGGTGCAGGACCATTTGGATGGCACACATACCCATAGAAGACTAGTTGACTTTAATACATCAGAAGTTAAACCTGTACTTAATTACTCTATACAGACAGGTGAAGAATTTGCTCTTGAGTTTATGAGAGATAAGGTGAATATGAGTAAGCCTGTATTATCAAATGTTAGTGATTCGAATTATACCCCAGGTTATATGGAACTAAAAGGCATTTTAGGTATCAAACATGCAGGATCTGAAAGTGGATCTGATATCTCTATGTTCTCAATGGCTGAGAAATATCCAAAAGAATTTGATACAACGAGTACATCTTTACCTGGAGACAGAATCAACTATGGGTCTATTCAATCAATGCCAAGAACTTCATTGAATCAGGATAATAGACAATTTGTGCCTGGGTATGGCTCTTTTGGAGCTTATGATAGATCAATGATCATTAAGTTTCTTTGCAGCTTTGGCGGTAAAATATTGCCACGACCATGCGATGGAAATCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGACTAAGAAAGGACATATCTTGGCTGGAGCTCATGCAGACAGCATTTCAAATCTATAGTCAGGTTTATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTGTCATCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACAAGATAGGGAAGGATCACAAAAACCTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAGGATGCTCAATTTGGTCTCAGCAGTATGGGTGATGATTCTGAGATTCAGTATGTTGTTGCCGTTAATGGCATGGACTTAGGATCAAGAAAAAACACTACAATGATTGGTGTCAGCGTTTCTGCAAATGACATAAATGAATTGAACAGGCAAAGTATTGACAGGGAGACTAATAATAGAGTTGGTATAGAATGTATTGTACAAGGAAATCCTCCCCCAACTAACAATTTTGACTCATCATTGGCTTCTCAATTTTCACCATCAGTGCTACCAACTTCCTCAAATTCATATGAAAAGTATCCACTGTTTTATAGTGATCAAATGATGTGCCATGGCAAACTTAGTGATCAATACTTTATTAATGAAGGCCTTGATCTTTGTCATAAACCTGTTATTGGAGAGACCCCGATGATTATGCCTCCCCATATGCTTGTCAATCAACAAGGGATTTTAAATGAAGGCCTTCCTCCTCGAGGAATACAAGTACAAAATTCAGAAATACCAACAACATTGGCAAACAAGATGGTTACTAGTTCAATTCCACAAGTAAGTGACCCTGGGAAAGTTTTGGCATCAGAATTACCATCACCCGCTCCTGCTCAACTGCTTAATGGTTACATGAAAAATAATTTTCCTGAAGCATCTGTTGTAGTTACTGTGTCAGAGGGGTTTCCATTGCATCCACCAAGCGTGAACAAGGGCCAAGATTATGAAGAAACTTCTTCTACAAGCAGTGCATTTGGTCCTACTTATGTTGATTCCCACTCCAATGCTTCTGACTTGAGTTCCCTTCATCCTCCTCCTCTTCCTAAGAGAGTTTACTATTCAGAGAGAATTCCACGCGAACAAGTAGAGTTGCTGAACCGGTCCTCAAAATCTGATGATACACACAGCTCTCAGTTTCATGTTCCAGATTTACTCTCTGATATCAACCCACCACATTCAGTTACAGAATCTGTTGACAAGTTGCATGATGGAAATCTGTCTGATCTAAATGAGGAATTAAGCATCATAGGAAATCCGTTGCATGCAAATGTATTTGCAGTTGAAAATGGGATTGTCAATAATCAAATCTACAAACAGCCGCCTGATGCAAACACTCAGATAAAATCAAAGCTAACTGAGCATGTGAATCCTGAGCTGAGGCAGGTATTATTGGACAATGAAGGACACACAGATGTGTTAAATAAAGATAATGTTGTTGGGTTGGAAATGAAAATTAATGGTAACAATAGCTATAACAAACCCCTGATTGATGAGACAAAAGCCAGTAAACCTGACTTGCAGAATTTGCACCAGGTTTCTTCTGGTAAGATTCTTAATGATCCTGCATCCACTCTTCCAGAGGTTGACTGGGGTGATACCTCTGTGAAAGAGTCTAATGACAATGTTAATGTGCAAGCCTTACCTGTATCTCTAAATGGGAATATTGATGATGATTCTGAAGAATTTCCTTCTGATGTCATTATGAACCAAGCACATGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGACCCCTCTAGTTTCCATCAATTAACTTCAAATGGAGTGGGCTTAAGCGTAAACATGGAAAATTGTGATCCTAAACGATGGTCGTATTTTCAAAAATTGGCTCAAGCAGGCACTGATAATGTGTCTCTTATTGACCAAGATCATCTTGGGTTTGCACCTGCAATAGGAAAAGTGGTTGGAGATGATAGAGCTCAACATGTTACACCTTTAACAACTGATGAAGTTTCTCTGAACCATGCAGAGTCCCACCTTGATTTTGTTGAAGAAAATTTGCTTGGAAGAACTGGAGGAGAAAGAAAGTCTAACTATGATCATTCCCAAGTGAATGACATTGAAAGCATGCAATTTGATGCCATGATGGAAAACATAAGAGCTCAAGAGTCAGAATGCGAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCAGGTACCTTTGGCACCGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCCATCAAAAGAATAAAAAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCTGATATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGGAGGATGGACCCGGAGGAACAATGGCTACTGTTACAGAGTACATGGTGGATGGTTCTCTTAGGCATGTGTTACTTCGCAAGGATAGGTATCTTGATTTTCGTAAGAGACTGATAATTGCGATGGACGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTACACTTTGACCTAAAATGTGACAATTTGCTGGTGAACTTGAAAGATCCTATGCGGCCTATTTGCAAGGTTGGGGATTTTGGATTATCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGAGGGGGACTCTTCCTTGGATGGCGCCAGAGCTTCTGAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTTTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGACCAACAATACCAAATCATTGTGATTCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCGGCTAGGCCCTCCTTCACAGAAATAGCTCGTCGATTGCGCATAATGTCTGCAGCTGCTAAATCATCGGGCCAAAAAGCATCTAGATGA 3612 0.3992 MESRVDEWHQSRSQPVVQDHLDGTHTHRRLVDFNTSEVKPVLNYSIQTGEEFALEFMRDKVNMSKPVLSNVSDSNYTPGYMELKGILGIKHAGSESGSDISMFSMAEKYPKEFDTTSTSLPGDRINYGSIQSMPRTSLNQDNRQFVPGYGSFGAYDRSMIIKFLCSFGGKILPRPCDGNLRYVGGQTRILRLRKDISWLELMQTAFQIYSQVYAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLQDREGSQKPRMFLFSMSDLEDAQFGLSSMGDDSEIQYVVAVNGMDLGSRKNTTMIGVSVSANDINELNRQSIDRETNNRVGIECIVQGNPPPTNNFDSSLASQFSPSVLPTSSNSYEKYPLFYSDQMMCHGKLSDQYFINEGLDLCHKPVIGETPMIMPPHMLVNQQGILNEGLPPRGIQVQNSEIPTTLANKMVTSSIPQVSDPGKVLASELPSPAPAQLLNGYMKNNFPEASVVVTVSEGFPLHPPSVNKGQDYEETSSTSSAFGPTYVDSHSNASDLSSLHPPPLPKRVYYSERIPREQVELLNRSSKSDDTHSSQFHVPDLLSDINPPHSVTESVDKLHDGNLSDLNEELSIIGNPLHANVFAVENGIVNNQIYKQPPDANTQIKSKLTEHVNPELRQVLLDNEGHTDVLNKDNVVGLEMKINGNNSYNKPLIDETKASKPDLQNLHQVSSGKILNDPASTLPEVDWGDTSVKESNDNVNVQALPVSLNGNIDDDSEEFPSDVIMNQAHGDILIDINDRFPREFFTDIFSKAVLEEDPSSFHQLTSNGVGLSVNMENCDPKRWSYFQKLAQAGTDNVSLIDQDHLGFAPAIGKVVGDDRAQHVTPLTTDEVSLNHAESHLDFVEENLLGRTGGERKSNYDHSQVNDIESMQFDAMMENIRAQESECEVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVEDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDFRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDSEWRTLMEQCWAPNPAARPSFTEIARRLRIMSAAAKSSGQKASR 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9611g00001 1203 SUPERFAMILY Protein kinase-like (PK-like) 902 1187 IPR011009 -
Vium9611g00001 1203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1049 1061 IPR008271 GO:0004672|GO:0006468
Vium9611g00001 1203 MobiDBLite consensus disorder prediction 553 586 - -
Vium9611g00001 1203 PANTHER SERINE-THREONINE PROTEIN KINASE 205 1188 - -
Vium9611g00001 1203 CDD STKc_MAP3K-like 930 1187 - -
Vium9611g00001 1203 SMART serkin_6 924 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9611g00001 1203 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 180 262 - -
Vium9611g00001 1203 Pfam Protein tyrosine and serine/threonine kinase 925 1187 IPR001245 GO:0004672|GO:0006468
Vium9611g00001 1203 Gene3D Phosphorylase Kinase; domain 1 918 1011 - -
Vium9611g00001 1203 SUPERFAMILY CAD & PB1 domains 177 264 - -
Vium9611g00001 1203 Pfam PB1 domain 177 260 IPR000270 GO:0005515
Vium9611g00001 1203 SMART PB1_new 175 262 IPR000270 GO:0005515
Vium9611g00001 1203 Gene3D - 181 261 - -
Vium9611g00001 1203 MobiDBLite consensus disorder prediction 499 528 - -
Vium9611g00001 1203 MobiDBLite consensus disorder prediction 493 534 - -
Vium9611g00001 1203 ProSitePatterns Protein kinases ATP-binding region signature. 930 955 IPR017441 GO:0005524
Vium9611g00001 1203 CDD PB1_UP2 164 260 - -
Vium9611g00001 1203 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 917 1011 - -
Vium9611g00001 1203 PRINTS Tyrosine kinase catalytic domain signature 1043 1061 IPR001245 GO:0004672|GO:0006468
Vium9611g00001 1203 PRINTS Tyrosine kinase catalytic domain signature 1114 1136 IPR001245 GO:0004672|GO:0006468
Vium9611g00001 1203 PRINTS Tyrosine kinase catalytic domain signature 1158 1180 IPR001245 GO:0004672|GO:0006468
Vium9611g00001 1203 PRINTS Tyrosine kinase catalytic domain signature 1006 1019 IPR001245 GO:0004672|GO:0006468
Vium9611g00001 1203 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1012 1203 - -
Vium9611g00001 1203 Gene3D Transferase(Phosphotransferase) domain 1 1012 1203 - -
Vium9611g00001 1203 ProSiteProfiles Protein kinase domain profile. 924 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9611g00001 Vium-Chr9611 10610 26099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9611g00001 34 566 MAP Kinase Kinase Kinase AT1G16270 38.550 5.82e-85 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vium9611g00001 PK_Tyr_Ser-Thr 1.6e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9611g00001 - - gmx:100799639 1959.11