Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium960g00002 ATGTCATTTGATTTCAGGCTGTACAAGGGAATTATACCTCTGTGGGGAAGACAGGTTCCATATACAATGATGAAATTTGCTTCTTTTGAGAACATAGTTGAGAGGATCTACAAGCATGTCATCTCCAAACCAAAATATGAATGCAGCATTTCCCAGCAAGTAGGTGTGAGCATTGTCGGTGGATACATGGCTGGTATATTGTGTGCTGTCGTCTCCCATCCCGCTGATAATCTTGTCTCTTTCCTTAACAATTCCAAAGGGGCAAGCGTTGCTGATGCTGTAAAGAAGCTTGGACTATGGGGTATGTTTACCCGTGGTCTACCTCTTCGTATTCTTATGGTTGGAACTCTCACAGGAGCACAATGGGGAATATATGATTCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGTGGTGTTGCTCCTGCTCTTCCTCCTTCTGCTGCTTAG 450 0.4422 MSFDFRLYKGIIPLWGRQVPYTMMKFASFENIVERIYKHVISKPKYECSISQQVGVSIVGGYMAGILCAVVSHPADNLVSFLNNSKGASVADAVKKLGLWGMFTRGLPLRILMVGTLTGAQWGIYDSFKVFVGLPTTGGVAPALPPSAA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium960g00002 149 ProSiteProfiles Solute carrier (Solcar) repeat profile. 52 131 IPR018108 -
Vium960g00002 149 FunFam Phosphate carrier protein, mitochondrial 4 133 - -
Vium960g00002 149 SUPERFAMILY Mitochondrial carrier 6 126 IPR023395 -
Vium960g00002 149 Gene3D Mitochondrial carrier domain 5 133 IPR023395 -
Vium960g00002 149 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 6 142 IPR044677 GO:0005315|GO:1990547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium960g00002 Vium-Chr960 262 1777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium960g00002 7 143 Chloroplast and Mitochondria Gene Families AT5G14040 77.372 8.24e-77 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium960g00002 K15102 - gmx:100804257 259.61