Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium960g00001 ATGATGAAATTTGCTTCTTTTGAGAACATAGTTGAGAGGATCTACAAGCATGTCATCTCCAAACCAAAATATGAATGCAGCATTTCCCAGCAAGTAGGTGTGAGCATTGTCGGTGGATACATGGCTGGTATATTGTGTGCTGTCGTCTCCCATCCCGCTGATAATCTTGTCTCTTTCCTTAACAATTCCAAAGGGGCAAGCGTTGCTGATGCTGTAAAGAAGCTTGGACTATGGGGTATGTTTACCCGTGGTCTACCTCTTCGTATTCTTATGGTTGGAACTCTCACAGGAGCACAATGGGGAATATATGATTCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGTGGTGTTGCTCCTGCTCTTCCTCCTTCTGCTGCTTAG 384 0.4479 MMKFASFENIVERIYKHVISKPKYECSISQQVGVSIVGGYMAGILCAVVSHPADNLVSFLNNSKGASVADAVKKLGLWGMFTRGLPLRILMVGTLTGAQWGIYDSFKVFVGLPTTGGVAPALPPSAA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium960g00001 127 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 1 120 IPR044677 GO:0005315|GO:1990547
Vium960g00001 127 Gene3D Mitochondrial carrier domain 1 111 IPR023395 -
Vium960g00001 127 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 109 IPR018108 -
Vium960g00001 127 SUPERFAMILY Mitochondrial carrier 2 104 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium960g00001 Vium-Chr960 55 1777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium960g00001 1 121 Chloroplast and Mitochondria Gene Families AT5G14040 76.860 4.70e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium960g00001 K15102 - gmx:100804257 224.942