Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9609g00001 ATGGACGAGGATCAAGAGATGGAGAAATTTGGAATGGAGAATGATTATGAGGGTGGTCAATGGATTGGTGGTGAATTCTACTACAAGAGTCGTAAGGAAAAGCGCACTCAGACAAAGGATGATGTTCTTTACGGGGTTTTTGCAGATTCTGATGACGATGATGATTATTCAAGTAGAAAACGGAGGAAGGACCGTGATTTTTCAAAGAAGCAAGATCTAACCAAGCCTGTGAATTTTGTGTCTACTGGAATGTTTATGCCCAATCAGGAAATTGATAATAAGTCCAAAGAGCAAAATGAGAAAGATGGTTATGTTAGTGAGGATAGGCCGGGCTTAGGATCAGGTTTTGGTATGGGGTCTGGTGGCACTTCTGGGACTGGTCTAGGTTTTAATTCTGGCAATACAGCAAATGGTTCAGAAAGAAATGATGATTCTGATGAGAACGGTCATGATAATTTCTTGCCCTCAGCATTCGGGAAGAAGATTAAGGAGGGGGCGATGAGAAGGGAAAGGGAAAGGGAGAAGGAGAGGTTGGAGAAGAAGAGGGGGAAGCATCAGAGTTCAGTTCAAGATGGGTTTAGTGATGTGGGGAAGTTTGAGAAGCATACAAAAGGGATAGGCATGAAGTTGTTGGAGAAGATGGGTTATAAAGGAGGCGGGCTTGGGAAGAATGAGCAGGGTATTGTGGCTCCTATTGAGGCCAGATTGAGGGCCAAGAATTCTGGCATAGGGTTTAATGAGTCTAAGGAGACTTTGCCGTTGCCGGTTTTGCAGCAAGAGAAGAAGAATGTGCTAGAGGTCTCACAACCTGTGGTTAGTAAAACAAAGGAAAGGTTATGGTCAAAGCAAGCAAGGTTGAAGAAAAAGAAGGAGGAAGAGTATGTAACAGCTGAGGAGTTGTTGGCAAGCAAGCAAGAACAAGAGTTTGAGGTTGTTCAGAAGGTATATGATATGAGAGGTCCACATGCTCGAGTAATAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAAGAAAATGATATCCCAATGCCAGAACTTCAGTATAATGTAGCGTTAATAGTTGGGTTGGCTGAGGCTGACATCCAACAGATTGACAGAGATTTGAGGAGAGAGAGGGAAACGGCACTTAGCTTGAAAAAAGAAAAAGAGAAGTTAGAAACTGAGGCAGCGTTCCAGAAGAAGCAGCTGGATAATATGGAGGAAATAAAGCGTGTGTTAGACCATGTTGAAGAAGAAAACACTTTGGGAACATTAACATTGGATTCCCTTGCTCATTGCTTTAGGGATTTACACAAAAGATATGCTGATGACTACAAGTTGTGTAACTTGTCTTGCATTGCTTGTTTTTATGCTCTACCCCTGTTTATCAGAGTGTTCCAAGGTTGGGATCCTCTGCGAAATCCATCTCATGGGTTGGAGTTGGTTTCAGAGTGGAAGGCATTGCTTCGAGAAGAAGATTCAGTTGATATATGGGATGTATCATCACCTTATACCCAATTGGTTTTAGAGGTTGTATTGCCAGCTATAAGAATATCTGGTATAAATACCTGGCAGGCCCGGGATCCTGAACCAATGTTATGGTTTCTGGAATTGTGGGAAAAGTTACTTCCTCAATCAGTCCTTGCCACCATATTAGACAATATAGTTATGCCTAAACTATCAAGTGCTGTGGATACTTGGGAACCACACCGTGAGACCATTCCTATCCACACTTGGGTGCATCCATGGCTACCGCTGCTGGGTCACAAGTTGGAGGGTATTTACCAGGTGATTCGTTTTAAATTGAGTACTGTTCTTGGTGCCTGGCACCCAAGTGATGGATCTGCTTATGCTATATTGTCTCCTTGGAAGTCTGTATTTGATTCTGCTAGTTGGGAACAACTTATGCTTCGTTTTATTGTACCAAAGTTACAGTCTGTCTTGCAAGAGTTCCAAGTGAACCCGGCAAGTCAGAATCTTGATCAATTTTATTGGGTAATGAACTGGGCTTCTGCTATTCCTATTCACCTAATGGTTGATATGATGGAGAAATTCTTCTTTGCTAAATGGCTTCAGGTTCTGTATCATTGGTTGTGCTCAAATCCTAATTTTGAAGAAGTTACAAAATGGTATTTAGGATGGAAGGAACTCATTCCAAAAGAACTGTTAGCAAATGAAAGCATCCGATACCAACTTAATCGCGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTGGTCCAACCTGGTTTAAAGGAGAATATAAGCTATCTTAGGGTACTTGAGCAGAGGCAATTTGAGGCTCAACAGAAAGCAGCAGCTTTTGCTCAACAGCAAGCAGCGGCTAGCTTGGGTGGTGCAGTCAACACAGATGGCACTCATGAATTGAGCTTGAAAGAAGTCATCGAGGCTCATGCTCAGCAACATGGTTTGCTATTCAAGCTTAAACCTGGTAGAATGCACAATGGTCATCAAATATATGGGTTTGGTAATGTCAGCATAATAATAGACTCTCTTAATCAAAAAGTATACGCCCAGAACGAAGAAATGTGGTCTATAGAATCTCTTCAGGGCTTGCTAGAGTTGCATAATAAATCCCTTAGTAAAAGGCGTTGA 2604 0.4205 MDEDQEMEKFGMENDYEGGQWIGGEFYYKSRKEKRTQTKDDVLYGVFADSDDDDDYSSRKRRKDRDFSKKQDLTKPVNFVSTGMFMPNQEIDNKSKEQNEKDGYVSEDRPGLGSGFGMGSGGTSGTGLGFNSGNTANGSERNDDSDENGHDNFLPSAFGKKIKEGAMRREREREKERLEKKRGKHQSSVQDGFSDVGKFEKHTKGIGMKLLEKMGYKGGGLGKNEQGIVAPIEARLRAKNSGIGFNESKETLPLPVLQQEKKNVLEVSQPVVSKTKERLWSKQARLKKKKEEEYVTAEELLASKQEQEFEVVQKVYDMRGPHARVINLSDLNAEEKAKENDIPMPELQYNVALIVGLAEADIQQIDRDLRRERETALSLKKEKEKLETEAAFQKKQLDNMEEIKRVLDHVEEENTLGTLTLDSLAHCFRDLHKRYADDYKLCNLSCIACFYALPLFIRVFQGWDPLRNPSHGLELVSEWKALLREEDSVDIWDVSSPYTQLVLEVVLPAIRISGINTWQARDPEPMLWFLELWEKLLPQSVLATILDNIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGIYQVIRFKLSTVLGAWHPSDGSAYAILSPWKSVFDSASWEQLMLRFIVPKLQSVLQEFQVNPASQNLDQFYWVMNWASAIPIHLMVDMMEKFFFAKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAAFAQQQAAASLGGAVNTDGTHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQNEEMWSIESLQGLLELHNKSLSKRR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9609g00001 867 MobiDBLite consensus disorder prediction 33 192 - -
Vium9609g00001 867 MobiDBLite consensus disorder prediction 93 107 - -
Vium9609g00001 867 Pfam Tuftelin interacting protein N terminal 4 102 IPR022159 -
Vium9609g00001 867 PIRSF TFIP11 1 862 IPR024933 -
Vium9609g00001 867 MobiDBLite consensus disorder prediction 162 188 - -
Vium9609g00001 867 SMART G-patch_5 201 246 IPR000467 GO:0003676
Vium9609g00001 867 Coils Coil 287 307 - -
Vium9609g00001 867 MobiDBLite consensus disorder prediction 119 139 - -
Vium9609g00001 867 ProSiteProfiles G-patch domain profile. 203 248 IPR000467 GO:0003676
Vium9609g00001 867 MobiDBLite consensus disorder prediction 52 72 - -
Vium9609g00001 867 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 854 IPR045211 GO:0000390
Vium9609g00001 867 MobiDBLite consensus disorder prediction 74 92 - -
Vium9609g00001 867 Coils Coil 168 188 - -
Vium9609g00001 867 Pfam G-patch domain 203 244 IPR000467 GO:0003676
Vium9609g00001 867 Pfam GC-rich sequence DNA-binding factor-like protein 421 688 IPR022783 -
Vium9609g00001 867 Coils Coil 362 413 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9609g00001 203 247 C2H2 Transcription Factor Family AT5G26610 48.889 3.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9609g00001 K13103 - gmx:100781621 1479.92