Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9601g00001 ATGGGGGAATCCAATGTTGTTAGCACAACTTGTCCTAAAAAATGTGATGAAGATGCTCGTGTATCTGCAATGTTGCTTAGTACTGCTGTGGTGTACCCTGCAGTTCTGAATGCTGCTATTGAGCTCAACCTGTTTGAGATCATAGCCAAGGCAACACCAAACGGTTCATTCGTGTCATCTCATGAAATTGCTTCTAAGCTCCCAAACCAGCATCCTGACTTGCCCGATAGGCTTGATCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACCACTTCAACACGCACCACACAACACGGTGCCACTGAGACAGTTTACGGACTCTCACAAATTGGACAATACTATGCCCCTGAGGCAACTAGAGGCTACTTCGCTTCATTTGCATCCTGTCTCTCTTGTCCTGCGCTCTCACCACTTTGGCTGAATTTCAAGGAAGCAGTGGTTGATGCAGACGTTGATTTGTTCAAGAAACTTCATGGGATAACAAAGTACCAGTACATGGAAAAGAATCCAAAAATGAACGAATTTTTTAACAAGACTATGGCGGATTTGTGTGCAACAGATATGATTAGAGTACTTGAAATATATAATGGATTTGAGGGAATATCAACGTTGGTTGATGTAGGAGGTGGAAATGGACAAAACCTGAAAATGATAGTCTCCAAATACCCTTCAATTCAAGGAATTAATTTTGATCTGCCCCAAGTCATTGAGAATGCACCACTGCTATCAGGGGTTGAGCATGTTGGAGGAGATATGTTTGCAAGAGTTCCAGAGGGTGACGCCATGACACTAAAGGTTGTCTTCCACAATTGGTCTGATGAGAAGTGCGTAGAAATTTTGAGCAATTGTCACAAAGCACTGTCTCCAAATGGGAAGGTGGTTGTTATGGAGATCATAATGCCAGAAGAACCAGAAGCGACTGAACAATCTAAGCTCTTTTCCTGCCTCGACAACCTTATGTTTATCACAGCAGGTGGAAAGGAAAGAACTTTGAAACAGTACGAGAATTTGTGCAAGCTCGCTGGTTTTTCAAAATTTCATGTTGCTTGTGATGCCTCCTGGCCGGGAGTGATGGAATTCTACAAATAG 1095 0.4292 MGESNVVSTTCPKKCDEDARVSAMLLSTAVVYPAVLNAAIELNLFEIIAKATPNGSFVSSHEIASKLPNQHPDLPDRLDRMLRLLASYSVLTTSTRTTQHGATETVYGLSQIGQYYAPEATRGYFASFASCLSCPALSPLWLNFKEAVVDADVDLFKKLHGITKYQYMEKNPKMNEFFNKTMADLCATDMIRVLEIYNGFEGISTLVDVGGGNGQNLKMIVSKYPSIQGINFDLPQVIENAPLLSGVEHVGGDMFARVPEGDAMTLKVVFHNWSDEKCVEILSNCHKALSPNGKVVVMEIIMPEEPEATEQSKLFSCLDNLMFITAGGKERTLKQYENLCKLAGFSKFHVACDASWPGVMEFYK 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9601g00001 364 FunFam Caffeic acid O-methyltransferase 119 364 - -
Vium9601g00001 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 363 IPR029063 -
Vium9601g00001 364 Gene3D Vaccinia Virus protein VP39 119 364 IPR029063 -
Vium9601g00001 364 PIRSF O-mtase 5 364 IPR016461 GO:0008168
Vium9601g00001 364 Pfam Dimerisation domain 35 86 IPR012967 GO:0046983
Vium9601g00001 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 364 IPR016461 GO:0008168
Vium9601g00001 364 CDD AdoMet_MTases 205 298 - -
Vium9601g00001 364 Pfam O-methyltransferase domain 141 346 IPR001077 GO:0008171
Vium9601g00001 364 FunFam Caffeic acid 3-O-methyltransferase 3 116 - -
Vium9601g00001 364 SUPERFAMILY "Winged helix" DNA-binding domain 16 116 IPR036390 -
Vium9601g00001 364 Gene3D - 3 116 IPR036388 -
Vium9601g00001 364 PANTHER O-METHYLTRANSFERASE 23 362 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9601g00001 Vium-Chr9601 90 4262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9601g00001 1 364 Monolignol Biosynthesis Gene Families AT5G54160 43.836 2.71e-103 307