Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9595g00001 ATGAAGCTCTCTGATTTTGGTCTCTGTAAGCCTCTCGATTGTATTGCCTTGTCTACACTGCATGAAAATCAGACCATGGATGATGAGACATTGGCAGAGCCAATGGATGTTGATGGATGTTTGCGTGATGCCGGACAATCGGAGCAGCTGAGAAGTCCTCGTCAGCATTGGCAGATGAACAGGAGGAAGTTGGCATTTTCAACAGTGGGGACACCGGATTACATTGCTCCTGAAGTACTTCTGAAAAAAGGCTATGGGATGGAATGTGATTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTGGTTGGTTACCCACCATTTTACTCCGATGACCCAATAACCACTTGCAGAAAGGTACCATTCTTAATTGGTTTAAAGACTTCACATTATAAATTAATATATTATTGCATCTCATATGTAGTTTAG 429 0.4219 MKLSDFGLCKPLDCIALSTLHENQTMDDETLAEPMDVDGCLRDAGQSEQLRSPRQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKVPFLIGLKTSHYKLIYYCISYVV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9595g00001 142 Gene3D Transferase(Phosphotransferase) domain 1 1 132 - -
Vium9595g00001 142 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9595g00001 142 Pfam Protein kinase domain 45 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium9595g00001 142 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 120 - -
Vium9595g00001 142 SUPERFAMILY Protein kinase-like (PK-like) 2 132 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9595g00001 Vium-Chr9595 2037 3665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9595g00001 1 120 AGC Kinase Gene Family AT4G33080 77.236 4.86e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vium9595g00001 Pkinase 7.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9595g00001 K08790 - vum:124848703 304.293