Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9590g00002 ATGATCCGAAACATAAGCCGGTCGGGTCGCCGGATACTAACTTTTCCGGCGGTTCATCCATGCGAAAGCATCACTCCCTCTACCCTTCTCCCTTCACTCATCAGTCTCAGCAAAGCTATCTCCTCTTTCCAGCACAGGTTATCGTGTTTTCCTTGCAACAAGCTAAACGCGAGAAACGCTATTCGTTTGACCCATCTTCTCCAACCTTTCCTTCGTGAAATCCGAGACTGTCATTCGGGTCTTCCTGATCCTGCAACTCTGAGCCTCTCCGAGCTCCATTTAACCTTCCAGAAGCTTTTTTTCCTTCTTGAAGATCTCTCCCGCGAAGGTGCCAAGCTTTACATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCAAGATCCATGGCCACTGCTTTAGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACCAAAGAGCATGCTTTGCTGCTGAACGTACAAGCCAGGAAGGGCAGGTTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTTGTGTCGGGTTTGACCCGGTTCGTGAACCAGGTTGCTCCGGATGAGGGTGATTTGAGGTGGGTCATTGAGTATATTGGGGTTAAAGGGTGGAATGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTCCGATGAGAAAAGGAACAAGGTGACACTTTTGAGTAGTTTGGTGGGGTTCATGAGTTATTGTAGATGCCTTGTGATGGAGGTTGTTGACTGTGAAGAGAGTAACAAAAAAATTGAGGGAAGGAGAGACAGTAGTATTGGAAGTGAGATTGATCTGAGTTTGAGTTGTCTTAACCCTGATGATTTTCGATGTCCAATCTCTTTGGAACTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACGTATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGAAACTTGACGTGTCCTAACACAGCTAAAAGGCTTATCACCACTGAAATGGTTCCAAACTTAGTGCTTCGGAAGTTGATTCAGCAGTATTGCTATGCAAATGACATAAGCATTCCCTTTGTTGATTTGGGTCGTAGGAATCGTGAGGGTACTAGGAGAGTGGAGCCTGAGAGTGTAGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGGCAAGATTGAGAATGGAAGTGGGGAAGAGATGAATAGAGGTGCATTTGAAATAAGGCTTATTTCCAAAACAAGCGTTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAGGTTGTTGTCATCGATCGATTCGTTGACTCAAGAGAATGCTGCAGCAGCCCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAATTGGGGGTTGGAATTAATTGTTGGGGTTTTAAAGAAGGGTGTGAAGATGGAAGCTCGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACCTGATAGGGAAGGAGGAAGAAGCAATTCCAGCATTGATAAGGCTTGTCAAAGATGGCTCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATATTTGGTCTTGTTAAGCACCATGAAAATCATAAGAGGGTGGTGGAAGGTGGAGCAGTTCCTTTGCTAGTTGGTATCTTGAAAGGATCTGAAAATGAAGACCTAATAACAGATTCTCTGGCAGTTCTGGCAAGTCTAGCAGAGAAGAGTGAGGGAATGTTAGCAATTATTGAGGAAGAGGGATTGCATGTAGCTGTTGAAATTTTGAGTTGTTCATGTTCGAGGGTGGGAAGGGAGCACTGTGTGGCCTTGTTGCTTTCTTTGTCTCTAAATGGTGGAGAGGAAGTGGTTGGTTATTTAGTGAAGAGTCCTTCTCTTATGGGATCATTGTATTCCCAAATAAGTGAAGGCACATCTCGAGCAAGGAAGAAAGCAAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTTAAGATTTCAGTTATTCCGCAAGAACAGTTCATTCATGTTCGGTAA 2082 0.4428 MIRNISRSGRRILTFPAVHPCESITPSTLLPSLISLSKAISSFQHRLSCFPCNKLNARNAIRLTHLLQPFLREIRDCHSGLPDPATLSLSELHLTFQKLFFLLEDLSREGAKLYMLMESDRVATQFRVISRSMATALDVFPFGSVEISEETKEHALLLNVQARKGRFEFEEEDKRVVMSVVSGLTRFVNQVAPDEGDLRWVIEYIGVKGWNECNKEVKFLEGEIGFKGSDEKRNKVTLLSSLVGFMSYCRCLVMEVVDCEESNKKIEGRRDSSIGSEIDLSLSCLNPDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNLTCPNTAKRLITTEMVPNLVLRKLIQQYCYANDISIPFVDLGRRNREGTRRVEPESVAAEGAMRMLASFLKGKIENGSGEEMNRGAFEIRLISKTSVFNRSCLVEAGLVPLLLRLLSSIDSLTQENAAAALLNLSKCAKSRSVMVENWGLELIVGVLKKGVKMEARQHAAAVLFYLSAEYGNLIGKEEEAIPALIRLVKDGSYRSKKNGLVAIFGLVKHHENHKRVVEGGAVPLLVGILKGSENEDLITDSLAVLASLAEKSEGMLAIIEEEGLHVAVEILSCSCSRVGREHCVALLLSLSLNGGEEVVGYLVKSPSLMGSLYSQISEGTSRARKKASALIRVLHDFYERRSSGFKISVIPQEQFIHVR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9590g00002 693 Pfam Armadillo/beta-catenin-like repeat 423 459 IPR000225 GO:0005515
Vium9590g00002 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Vium9590g00002 693 SMART arm_5 461 502 IPR000225 GO:0005515
Vium9590g00002 693 SMART arm_5 420 460 IPR000225 GO:0005515
Vium9590g00002 693 SMART arm_5 543 584 IPR000225 GO:0005515
Vium9590g00002 693 FunFam RING-type E3 ubiquitin transferase 368 679 - -
Vium9590g00002 693 Gene3D - 364 675 IPR011989 -
Vium9590g00002 693 CDD RING-Ubox_PUB 287 339 IPR045210 -
Vium9590g00002 693 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Vium9590g00002 693 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Vium9590g00002 693 SUPERFAMILY RING/U-box 287 358 - -
Vium9590g00002 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Vium9590g00002 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Vium9590g00002 693 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Vium9590g00002 693 FunFam RING-type E3 ubiquitin transferase 286 358 - -
Vium9590g00002 693 PANTHER U BOX DOMAIN-CONTAINING 58 668 - -
Vium9590g00002 693 SUPERFAMILY ARM repeat 383 668 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9590g00002 Vium-Chr9590 45266 47621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9590g00002 1 691 U-box Gene Family AT1G60190 44.193 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9590g00002 - - vra:106779024 1251.5