Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9582g00004 ATGTTGTGCGCCTGTTCTTCCGGTGGGCAGTTCAAATTCGAAGAGCCGCCGCAGTCGCCGGACTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGAACACCGGGGAATGGGAGCCTAAATTCGATGAAACGCAAGTAGAACAAGCTGAATCTACTCTTAAAGAAGCTCTTTCCTTAAACTATGAGGAGGCCAGGGCTTTATTGGGGAGACTTGAATACCAAAGAGGGAATTTCGATGCTGCACTTCAAGTGTTTCAGGGTATAGACATCAAGGGTTTGACCCCGAGAATGATCAAGGCTATTGCTGAAAGAATCAAGCAAAGGAAACCACGTTCTAAGGCAGATATCGTGGGTTCAAATGTGATGTCATTGCACTCTGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAGGTCACTGGAGGAACTTGGGGAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTCTTGATACAGTTGAATCTGCCCTTCCGAATGGAATGCCTGAGGGTATTGGAGAAGATTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAATTACTTCCAAGGCTTTGGATCAAAGCAGGATTTCTGGATGAAGCTGTAGCTGCATATCGTCGTGCTCTGGTCAAGCCATGGAGTTTGGATCCACAAAGGTTGGCTTCTGTAGAAAAGGATTTAGCTACGATACTACTCTATGGAGGTGTAGAAGTTAGCTTATCCTCTCAGCAGCAGGTGTGGGGTAAAACAACTCCTACCAACAGTGTTGAAGAAGCGATACATTTGCTAGTAATACTCATGAGCAAGGTGGCAATTGGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTCACTGGCATGTTTGAGTTACTTGCGGATCATGTAGAGCAGATCCTTCCAGGTATCTATAGTCGGGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTTTAGTGCAGCAGGACATGATGAGGTGGCATTGAACCTTTTAAGGAAGGCTTGCGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGCTTGGAGCAAAACTCTGTTCCCTAGATCCTCGCCATGCTCATGAAGGCATTAACTTCTCACGTAAAGTTATTGAGCTAGCTAAGCATCAAAATAAGCATTTTCTGAGTCAAGGCCATAAATTTCTTGGAATCTGCTATGGTGCTGCAGCTAGAATTTCTGTACTCGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCCGTAAATGGAAATGATGACTTGGAAGCAATATTCAACCTTGGATTGGAAAATGCAATTCAAAGGAATCTGGATGCAGCTTACAACAACATAATGACGTTCTCAGACATGAGTGCTGGCAGTTCGAGAGGTTGGCAGCTGTTAGCACTTATAGTATCTGCACTGCAGCGGTTTAAGGATGCAGAAACTATAGTTGATTTTGCTTTAGATGAGGCTGGGGGGATGGATCAACTTGATCTTCTGAGATTGAAAGCTGTACTTCAAATTTCTCAACAGCAACCCAGGCAAGCAATAGAGACATTTCGAATCTTGCTTGCGTTAATTCAAGCAAAAAAGGAGTTTTGGCTTCAAGAAAACAACATTGATCGAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAAGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACAATTTATACAGATATCGGTTGCTTGCTTGATGCAAAAACTTGTGTTGACAAGGCCCAATTGATAGAGTTTTTTTCTCCAAGAAGTTGGCATATAGCAGGGGTGGTGCTTGAAGCTCAATCATTATACAGAGAAGCATTTGTTTCCTTTTCAATATCATTGGCAGTAGAACCAGATTACATTCCCAGTATCATTTCTACCGCAGAATTATTGATGAAACTTGGTATGCAATCACTTCCAATTGCAAGAAGTTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCACGATGTTTGGTTCAACCTTGGCTTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAGCTGAAGCTTTCTGCTCCAGTGCAAAAATTTAAGTAA 2151 0.4268 MLCACSSGGQFKFEEPPQSPDSLATRDFSASGLSSRNTGEWEPKFDETQVEQAESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERIKQRKPRSKADIVGSNVMSLHSVSLLLEAILLKARSLEELGECIEAAKECRIILDTVESALPNGMPEGIGEDCKLQEMFHKALELLPRLWIKAGFLDEAVAAYRRALVKPWSLDPQRLASVEKDLATILLYGGVEVSLSSQQQVWGKTTPTNSVEEAIHLLVILMSKVAIGEIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYSRAERWYFLALCFSAAGHDEVALNLLRKACGSSEANHRPHFPSFLLGAKLCSLDPRHAHEGINFSRKVIELAKHQNKHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNCAAVNGNDDLEAIFNLGLENAIQRNLDAAYNNIMTFSDMSAGSSRGWQLLALIVSALQRFKDAETIVDFALDEAGGMDQLDLLRLKAVLQISQQQPRQAIETFRILLALIQAKKEFWLQENNIDREQAFRHEALTEKKLEMEAWQDLATIYTDIGCLLDAKTCVDKAQLIEFFSPRSWHIAGVVLEAQSLYREAFVSFSISLAVEPDYIPSIISTAELLMKLGMQSLPIARSFLMNALRLEPTNHDVWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9582g00004 716 MobiDBLite consensus disorder prediction 5 46 - -
Vium9582g00004 716 PANTHER PROTEIN NPG1 1 716 IPR043376 -
Vium9582g00004 716 SUPERFAMILY TPR-like 50 356 IPR011990 GO:0005515
Vium9582g00004 716 Gene3D Tetratricopeptide repeat domain 658 713 IPR011990 GO:0005515
Vium9582g00004 716 ProSiteProfiles TPR repeat profile. 677 710 IPR019734 GO:0005515
Vium9582g00004 716 MobiDBLite consensus disorder prediction 22 38 - -
Vium9582g00004 716 SUPERFAMILY TPR-like 564 707 IPR011990 GO:0005515
Vium9582g00004 716 SMART tpr_5 319 352 IPR019734 GO:0005515
Vium9582g00004 716 SMART tpr_5 607 640 IPR019734 GO:0005515
Vium9582g00004 716 SMART tpr_5 512 545 IPR019734 GO:0005515
Vium9582g00004 716 SMART tpr_5 476 509 IPR019734 GO:0005515
Vium9582g00004 716 SMART tpr_5 677 710 IPR019734 GO:0005515
Vium9582g00004 716 Gene3D Tetratricopeptide repeat domain 31 251 IPR011990 GO:0005515
Vium9582g00004 716 Gene3D Tetratricopeptide repeat domain 259 548 IPR011990 GO:0005515
Vium9582g00004 716 Pfam Tetratricopeptide repeat 49 91 - -
Vium9582g00004 716 Gene3D Tetratricopeptide repeat domain 549 657 IPR011990 GO:0005515
Vium9582g00004 716 SUPERFAMILY TPR-like 427 600 IPR011990 GO:0005515
Vium9582g00004 716 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9582g00004 Vium-Chr9582 25075 29209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9582g00004 1 715 Calmodulin-binding Proteins AT1G27460 58.971 0.0 851
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9582g00004 K21843 - gmx:100799251 1252.27