Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium9582g00002 ATGGCTCCTACGCCTGAGCCTCCACGAATCAACATTGAACCTGAATATTGTCCTCAGGCGGTGACGCAATGGTACCATCTCGCATCACTGCCAAGTAACAGGAGAGAATGTTCATTACGCAGGGACCTTTCCTTAAAAGCCAAGAAACATCTTCGTTATCTGGGTTGGAAATTTTGGTATGTTGAGAAGAAAGATAAGTGGGAGATGCGTTACACATCACCCATCACTGGCAAGAATTACATTTCTCTCGCCAGGGCTTGTAAAGCTTGCATAGAAGAGGGAGGCTGCATTGAAAACCCTCAAGATTTTCAAGAAAACAACGTTGTTCTCGAATATCCTACTTCTTCTTCTCAACCAAATAAGGAGACAAGAGAATCCAAAAAGAGAACTAGGGTGTGCAAGAAAAGGGAAAAGGATGATCACGATGATGAGTTGGTAGAAGGCTCTAGTTCTACGAATGGTAGAAGAGGTAAGGCTGCGCCGTCAATCAAAACAACGACGCAAGAGGGTGAGGCACCGGTTTCCAAGTCTTCACAACAACACCGTGGAACTCTTATCCCTTGGTTGATAGAAAACGGTGCTGTGGGTTTAGATTCCGTGGTATCCTGCCGTGGTTCAAACGGCGTGGTCAAGAAAGGGAAGCTGTTGTACGGTGGCATATGTTGTGATTGCTGTGACAAGTTTTTTTCTCCCACTCGCTTTGAGGCTCATGCCAGGTGTCAAAGGCACAGACCAAATTCTAGCATTTTCTTGGAAGATGGAAGGTCATTGTTAGATTGTAAAAACGAGGCCCTAAGTTCTCAGCAAAACGGGTTTGTGAAAGAAGATGAAATCGATGAGTGTGGTTATCCAAATGATAGCACTTGTGCTGTTTGTCGTTACGGGGGTGAACTGGTGTTGTGTGATGGATGCCCGTCTTCGTTCCACCTCAAGTGTTTAGGTTTAAGCGTTGTTCCTGATGGTGATTGGTTCTGCCCAGTTTGTTGTTGCAAAATATGCAGGCGACCCAGATGCAGAGATGACCGTGCTCGTAATGTGGGGGTTAACAGTATTTTAGTTTGTCCTCAGTGTGAGAGGAAATTCCATTTTGGATGCTTAAAGGCTCCAGCCTCGTCACATACCAAGTTGGAAAAGGAAGAAGACCGTGTTGGTGATAGGAATTGGTTTTGCAGTAGAGACTGCGAGAAAATATTTTTCGGTCTGCAGGAGCTTTTGGGAAAAACCATTAATGTTGATGGAGATGATGTTACTTGGACGCTGTTGAAGGCAGTGAAAAGGGATAGCAGTGGAGAAGATTATCTTAATTTGGATGGAGACGAAGGTTTGAGTGAAAACGAAAGGAAGCTGAGTGTAGCTCTTGATGTATTGCGTGGGAGTTTTGACCCAATTATTGACGCTTTTTCTGGTAGAGATGTGATAGCTGACGTTGTTTTCAGCAGAGGGTCAGAACTGGGTCGGTTGAACTTTCGTGGGTTTTATACTGTGGTTCTGGAGAGGGAGAAGGAGGTGATTTCTGCTGCTACTGTGAGGATTTTGGGTAAGAGGGTTGCGGAAATTCCCTTTGTGGCAACAAGGATGCATTGTAGAAGACAAGGAATGTGTAGCATGTTGATGAATGAGATTGAAAAACAGTTAAGTTACTTGGGAGTGGAGAGGTTGGTTCTGCCTTCGTCGTGCAGTGCGATAAACACATGGACAAAATCATTTGATTTTGTAAAGATGAAACCTTCAGATAAGTCTGAGCTACTTGATTTTGTTTTTCTGTCCTTCGAGGGTACCATCATGTGCCATAAACCTTTGTTGCAAGAAACTTATGTATGA 1821 0.441 MAPTPEPPRINIEPEYCPQAVTQWYHLASLPSNRRECSLRRDLSLKAKKHLRYLGWKFWYVEKKDKWEMRYTSPITGKNYISLARACKACIEEGGCIENPQDFQENNVVLEYPTSSSQPNKETRESKKRTRVCKKREKDDHDDELVEGSSSTNGRRGKAAPSIKTTTQEGEAPVSKSSQQHRGTLIPWLIENGAVGLDSVVSCRGSNGVVKKGKLLYGGICCDCCDKFFSPTRFEAHARCQRHRPNSSIFLEDGRSLLDCKNEALSSQQNGFVKEDEIDECGYPNDSTCAVCRYGGELVLCDGCPSSFHLKCLGLSVVPDGDWFCPVCCCKICRRPRCRDDRARNVGVNSILVCPQCERKFHFGCLKAPASSHTKLEKEEDRVGDRNWFCSRDCEKIFFGLQELLGKTINVDGDDVTWTLLKAVKRDSSGEDYLNLDGDEGLSENERKLSVALDVLRGSFDPIIDAFSGRDVIADVVFSRGSELGRLNFRGFYTVVLEREKEVISAATVRILGKRVAEIPFVATRMHCRRQGMCSMLMNEIEKQLSYLGVERLVLPSSCSAINTWTKSFDFVKMKPSDKSELLDFVFLSFEGTIMCHKPLLQETYV 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium9582g00002 606 MobiDBLite consensus disorder prediction 121 149 - -
Vium9582g00002 606 Pfam Acetyltransferase (GNAT) family 493 571 IPR000182 GO:0016747
Vium9582g00002 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 397 IPR013083 -
Vium9582g00002 606 Pfam Tify domain binding domain 218 264 IPR032308 -
Vium9582g00002 606 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 487 567 IPR016181 -
Vium9582g00002 606 PANTHER PHD FINGER PROTEIN 12 18 602 IPR042163 GO:0003714|GO:0045892
Vium9582g00002 606 SMART PHD_3 288 329 IPR001965 -
Vium9582g00002 606 SMART PHD_3 330 394 IPR001965 -
Vium9582g00002 606 SUPERFAMILY FYVE/PHD zinc finger 275 339 IPR011011 -
Vium9582g00002 606 MobiDBLite consensus disorder prediction 150 180 - -
Vium9582g00002 606 Pfam PHD-finger 289 330 IPR019787 -
Vium9582g00002 606 CDD NAT_SF 495 555 - -
Vium9582g00002 606 MobiDBLite consensus disorder prediction 110 180 - -
Vium9582g00002 606 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 329 IPR013083 -
Vium9582g00002 606 ProSiteProfiles Zinc finger PHD-type profile. 286 331 IPR019787 -
Vium9582g00002 606 SMART ring_2 330 393 IPR001841 -
Vium9582g00002 606 SMART ring_2 289 328 IPR001841 -
Vium9582g00002 606 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 439 593 IPR000182 GO:0016747
Vium9582g00002 606 Gene3D - 451 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium9582g00002 Vium-Chr9582 5535 7355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium9582g00002 18 548 PHD Transcription Factor Family AT5G58610 33.441 1.32e-91 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium9582g00002 Acetyltransf_1 7.8e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium9582g00002 - - vra:106760454 1106.28