Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00017 ATGGCTTTTAAGAACTTGTCCCTCCTTACGCTCTGTGTTTCTCTTGTGTTATCCTCCTTGTCACCGATTTCCATAGCTTCTAATAATAAACGTGATGTTGTTCCACCAGAAACCATATGCAAATCCACCGTATATGCTTCCTACTGCAAAACCCTGCTTGCTAATCAAAACGGCACAATCTTTGACTATGGTCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTAAACCTAGTAAACTCATTCCTCCGAGACAGATCCTCTTTGTCTCTTCCCACAACTCGCGCCCTTGAAGACTGTCAATTCCTCGCTGAACAAAACTTTGAATACTTATCAAACGCACTCGACCATGTTGATAAAGCCAGCGATGATCTTCCCACCACTCAAGCTGAAGACCAGCAAACCATGCTTAGTGCTGCTTTGACAAACCAAGAAACTTGTTTAGAAGGTTTACAGACCACAGCTTCCGATGAAAGAGTGAAGAGTGAACTTCTCTCATCACTCTCTGATGACAAGAAGCTTCACAGTGTTTCCCTTGATTTGTTCATCAAGGGTTGGGTGCCTGAGAAGAAAATCTCAACATCATGGCAACCCAATGGAAGACACTTGGGTTTCCGCAACGGTCGTTTACCATTGAGGATGTCTAACCGTGTACGTGCCATCTATGATTCTGCTAGAGGTCACGGCAGAAAACTGCTTCAAGATAGCAGCGACAGTGTACTGGTCAGTGATATTGTGGTTGTTAGTCAGGACGGAAGCGGGAACTTCACTACCATCAACGGTGCTATAGCGGCTGCGCCAAATAACTCTGCTGCTAGTGATGGTTACTTTTTAATTTTAGTCACCGGAGGTGTGTACCAAGAGTATGTATCCATAGCCAAAAACAAAAAGTACTTGATGATGGTTGGAGAAGGGATCAACCAAACGATTATCACCGGTGATCACAACGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGGTTTGTAGCTGTTAACATGACATTCCGAAACACTGCTGGGCCAAGCAAGCACCAAGCGGTTGCAGTGAGAAACGGAGCTGATTTGTCAACTTTTTACAGCTGCAGCTTTGAGGGGTATCAAGACACCTTGTACACGCATTCCCTTAGACAGTTTTACCGGGAATGTGACATCTACGGTACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACATGTATCCACGCCTTCCCTTGAGTGGACAATTCAATGCCATCACTGCCCAAGGCAGAACAGACCCAAATCAAAATACAGGCACTTCAATTCAGAACGCTACTATAAAAGCTGCTGCTGATTTGGCTCCTGTAGTTGGGAGCGTGAAAACATATCTTGGGAGACCATGGAAAGAGTACTCAAGAACAGTTTATATGCAGTCTTTCATGGATAGTTTGATAAATCCTGCTGGATGGCATGAATGGAGTGGAGATTTTGCCCTAACCACCTTATACTATGCAGAGTACAATAACACAGGACCTGGTTCAAGCACCCAAAACCGTGTAACGTGGTCTGGTTACCATGTTATCAATGTTACCGATGCGGTTAACTTTACTGTGGCTAACTTCTTGGACGGGGATAGTTGGCTTCCTATAACTGGCGTTCCATATAGGAGTGGATTGATATAA 1689 0.4417 MAFKNLSLLTLCVSLVLSSLSPISIASNNKRDVVPPETICKSTVYASYCKTLLANQNGTIFDYGRISVRKSLSQSRKFLNLVNSFLRDRSSLSLPTTRALEDCQFLAEQNFEYLSNALDHVDKASDDLPTTQAEDQQTMLSAALTNQETCLEGLQTTASDERVKSELLSSLSDDKKLHSVSLDLFIKGWVPEKKISTSWQPNGRHLGFRNGRLPLRMSNRVRAIYDSARGHGRKLLQDSSDSVLVSDIVVVSQDGSGNFTTINGAIAAAPNNSAASDGYFLILVTGGVYQEYVSIAKNKKYLMMVGEGINQTIITGDHNVVDNFTTFNSATFAVVAQGFVAVNMTFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNMYPRLPLSGQFNAITAQGRTDPNQNTGTSIQNATIKAAADLAPVVGSVKTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALTTLYYAEYNNTGPGSSTQNRVTWSGYHVINVTDAVNFTVANFLDGDSWLPITGVPYRSGLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00017 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Vium957g00017 562 SMART PMEI_2 31 184 IPR006501 GO:0004857
Vium957g00017 562 PANTHER PECTINESTERASE 23 551 - -
Vium957g00017 562 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Vium957g00017 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Vium957g00017 562 FunFam Pectinesterase 243 561 - -
Vium957g00017 562 FunFam Pectinesterase 37 187 - -
Vium957g00017 562 Pfam Plant invertase/pectin methylesterase inhibitor 37 183 IPR006501 GO:0004857
Vium957g00017 562 CDD PMEI-like_3 38 189 - -
Vium957g00017 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Vium957g00017 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 185 IPR035513 -
Vium957g00017 562 Gene3D - 243 561 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00017 Vium-Chr957 90572 92610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00017 38 562 Carbohydrate Esterase AT1G02810 60.436 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00017 K01051 - gmx:100813051 926.776