Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00016 ATGGATATGTGTTTGCTTCAGCACCAAGCGGTTGCAGTGAGAAACGGAGCTGATTTGTCAACTTTTTACAGCTGCAGCTTTGAGGGGTATCAAGACACCTTGTACACGCATTCCCTTAGACAGTTTTACCGGGAATGTGACATCTACGGTACCGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTCCAAACATGTAACATGTATCCACGCCTTCCCTTGAGTGGACAATTCAATGCCATCACTGCCCAAGGCAGAACAGACCCAAATCAAAATACAGGCACTTCCATTCAGAACGCTACTATAAAAGCTGCTGCTGATTTGGCTCCTGTAGTTGGGAGCGTGAAAACATATCTTGGGAGACCATGGAAAGAGTACTCAAGAACAGTTTATATGCAGTCTTTCATGGATAGTTTGATAAATCCTGCTGGATGGCATGAATGGAGTGGAGATTTTGCCCTAACCACCTTATACTATGCAGAGTACAATAACACAGGACCTGGTTCAAGCACCCAAAACCGTGTAACGTGGTCTGGTTACCATGTTATCAATGTTACCGATGCGGTTAACTTTACTGTGGCTAACTTCTTGGACGGGGATAGTTGGCTTCCTATAACTGGCGTTCCATATAGCAGTGGATTGATATAA 648 0.4383 MDMCLLQHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNMYPRLPLSGQFNAITAQGRTDPNQNTGTSIQNATIKAAADLAPVVGSVKTYLGRPWKEYSRTVYMQSFMDSLINPAGWHEWSGDFALTTLYYAEYNNTGPGSSTQNRVTWSGYHVINVTDAVNFTVANFLDGDSWLPITGVPYSSGLI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00016 215 ProSitePatterns Pectinesterase signature 2. 48 57 IPR033131 -
Vium957g00016 215 PANTHER PECTINESTERASE 7 204 - -
Vium957g00016 215 Gene3D - 6 214 IPR012334 -
Vium957g00016 215 Pfam Pectinesterase 7 200 IPR000070 GO:0030599|GO:0042545
Vium957g00016 215 SUPERFAMILY Pectin lyase-like 7 213 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00016 Vium-Chr957 87814 88783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00016 7 215 Carbohydrate Esterase AT4G02330 76.077 7.81e-118 345