Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00015 ATGGCTATGGCTTTTAACAGCTTGTACGCTCTCACACTCTTTGTGTCCCTTCTGCTATCCTTCTTCACGTCGATTTCCATAGCTGATAATAGCCATGCAGTTGTTCCACCAGAAACCCTATGCCACTCAACCTTGGACCCTTCTTACTGCAAATTTGTTCTTGCTAATCAAAATGGTAGCATATATGACTATTGTCAATTTTCTGTTCGAAAATCCCTGTCCCAGTCTCGTAAGTTCTTGAACGCGATGTACTCATATCTTCAAAATCCCTCCTCTCTCTCCCAACCAACAATCCTTGCTCTTCAAGATTACCAATCACTTTCTGAACTAAACTTTGAATACTTATCAACGACAATTGACACTGTCGATAAAGCTAAGGATGTTCTTCCCACCTCTCAAGCAGACGATGTTCACACATTGCTTAGTGCTGTTTTGACAAATCACCAAACTTGTTTAGATGGTCTTCAAACCTCAGCTTCAGATCCAAGAGTGAAGAATGATCTTTTTTCCCAACTCTTGGATGATATGAAGCTTAACAGTGTCTCACTTTATTTGTTCACCAAGGCTTGGGTTCCTGAGAACAGAATATGGAAACCCCATGGAGCCATCCAGAATGATCGTTTACCCTTGAAGATGTCAAACAAAGTTCGTGCGATTTATGATTCTGCGAAAGGTCAAGGGAGAAAACTGCTACAAACATCGGATGACAGCGAAAGCGTTCTGGTGAGTGATATTGTGGTGGTTAGTAAAGATGGAAGTGGAAACTTTACCACCATAAACGATGCCATAGCTGCTGCACCAAATAACACAGCTGTTACGGATGGCTACTTCATTATTATCATCAGTGAGGGTATATATCAAGAGTATGTATCTATAGCAAAAAACAAGAAGTTCTTGATGTTAATTGGAGATGGAATCAACCGAACAATTATAACTGGCGATCACAATGTTGTTGATGGCTTTACAACATTCAACTCAGCCACATTTGCTGTGGTAGGACAAGGATTCGTAGGTGTGAACATAACATTCCGCAACACTGCGGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCTCCTTCTATAGCTGTAGTTTTGAAGGGTATCAAGACACTTTATACACCCATTCCCTGAGACAGTTTTATCGAGAATGTGACATATATGGCACAGTTGACTTCATATTTGGAAACGCAGCTGTTGTTTTGCAAAACTGCAATATGTATCCCCGCCTTCCGTTGAGTGGACAATTCAATGCCATCACTGCACAAGGTCGAACTGATCCAAATCAAAACACCGGCATTTCCATACAAAATGCCACTATAAAAGCAGCACAGGATTTGGCTCCAACGGTTGGTACTGTGGAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACTGTTTATATACAGTCTTTCATGGATAGTTTGATAGCTCCTGCTGGTTGGCATGAATGGAATGGGAATTTCGCTCTCAGCACATTGTACTACGCTGAATATGATAACACGGGTCCTGGTTCAAACACTGCAAACCGAGTAAACTGGTCTGGGTTTCATGTTATCGATGCCACTGATGCAGTCAATTTTACTGTCTCTAGCTTCTTGGATGGAGATGATTGGGTGCCTCGAACCAGCATTCCGTACCAGACATCTTTGTAA 1677 0.4204 MAMAFNSLYALTLFVSLLLSFFTSISIADNSHAVVPPETLCHSTLDPSYCKFVLANQNGSIYDYCQFSVRKSLSQSRKFLNAMYSYLQNPSSLSQPTILALQDYQSLSELNFEYLSTTIDTVDKAKDVLPTSQADDVHTLLSAVLTNHQTCLDGLQTSASDPRVKNDLFSQLLDDMKLNSVSLYLFTKAWVPENRIWKPHGAIQNDRLPLKMSNKVRAIYDSAKGQGRKLLQTSDDSESVLVSDIVVVSKDGSGNFTTINDAIAAAPNNTAVTDGYFIIIISEGIYQEYVSIAKNKKFLMLIGDGINRTIITGDHNVVDGFTTFNSATFAVVGQGFVGVNITFRNTAGPSKHQAVAVRNGADMSSFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNMYPRLPLSGQFNAITAQGRTDPNQNTGISIQNATIKAAQDLAPTVGTVETYLGRPWKEYSRTVYIQSFMDSLIAPAGWHEWNGNFALSTLYYAEYDNTGPGSNTANRVNWSGFHVIDATDAVNFTVSSFLDGDDWVPRTSIPYQTSL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00015 558 CDD PMEI-like_3 39 190 - -
Vium957g00015 558 SMART PMEI_2 32 185 IPR006501 GO:0004857
Vium957g00015 558 Gene3D - 240 558 IPR012334 -
Vium957g00015 558 FunFam Pectinesterase 38 188 - -
Vium957g00015 558 PANTHER PECTINESTERASE 24 550 - -
Vium957g00015 558 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Vium957g00015 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 188 IPR035513 -
Vium957g00015 558 Pfam Plant invertase/pectin methylesterase inhibitor 38 170 IPR006501 GO:0004857
Vium957g00015 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 188 IPR035513 -
Vium957g00015 558 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Vium957g00015 558 Pfam Pectinesterase 246 544 IPR000070 GO:0030599|GO:0042545
Vium957g00015 558 FunFam Pectinesterase 239 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00015 Vium-Chr957 83122 85125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00015 13 558 Carbohydrate Esterase AT1G02810 56.250 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00015 K01051 - gmx:100792847 957.207