Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00013 ATGACTTCCAAGCTTTCTTATTCTCTCTCATTCTTTCTCTTTCTCTTACCTTTATTTCACACCGTAATAGTTTCCGCCGACACCGTTTCAAATCCTGCAACTCCTGTCTCCCCTGGAACCGCATGCCAATCCACCCCAGACCCATCTTACTGCAAATCCGTTCTCCCTCCCCAAAACGGCAACGTTTACGACTATGGCCGCTTCTCCGTCAAAAAATCACTATCGCAGGCTCGAAAGTTCTTGAGCCTCGTCGATAAATACCTCCAACGTCGTTCTTCTCTTTCCGCCACCGCAATCCGTGCGCTTCAAGATTGTCGTACTCTCGGGGAACTCAACTTCGATTTCCTTTCCAGTTCCTTCCAAACCGTCAACAAGACAACGAGATTTCTCCCTAGTTTTCAAGCCGACGACATCCAAACCTTACTCAGCGCCATTCTGACCAACCAGCAAACATGCTTGGACGGTCTCAAAGACACTGCTTCCGCTTGGAGCGTCAGAAACGGTCTCATACTCCCTCTTTCCAACGACACCAAACTCTACAGTGTCTCGCTTGCCCTCTTCAATAAGGGTTGGGTTCCCAGATCCAAAGTCAACACGATGCACCCTACCAAGAAACAACAAGGGTTCCGAAACGGGCGTTTGCCGCTTAAGATGTCCAGCACAACCCGTGCGATCTTAGAGTCTGTGAGTAGGAGGAAGCTACTTCAGGCCTCGGTGGGTCAGGATGTTGTGGTGAGAGATATCGTCACGGTTAGCCAAGATGGAAGCGGGAACTTCACCACCATCAGTGATGCCATTGCTGCCGCTCCTAACAAATCTGCCTCTACCGATGGATACTTCCTTATCTATGTCACCGCTGGTGTGTATGACGAAATTGTGTCCATTGATAAGAAGAAGACCTACTTGATGATGGTCGGCGATGGTATCAACAAGACAATCATCACCGGCAATCGTAGTGTAGTTGATGGCTGGACAACCTTCAGCTCCGCGACATTAGCTGTGGTAGGGCAAGGATTCGTGGGTGTGAATATGACCATTCGCAACACCGCCGGAGCCGTGAAGCACCAAGCGGTGGCCCTTCGAAACGGAGCAGATTTGTCTACGTTTTACAGCTGCAGCTTCGAGGGATACCAAGACACATTGTACGTTCATTCGCTGAGGCAATTCTACAGGGAATGCGACATCTACGGCACCGTAGATTTCATATTCGGAAACGCTAAGGTGGTATTGCAAAGTTGCAACATGTATCCTCGTCTCCCCATGCAGGGTCAATTCAACGCCATCACTGCACAAGGAAGAACAGATCCAAACCAAGACACTGGAATTTCTATCCACAACTGTAGCATTAGAGCAACTGACGATTTAGCTGCTAGCAGAGGTGTTTCAACGTATTTGGGAAGGCCATGGAAGGAATATTCTAGAACTGTTTATATGCAAACTTTTATGGATGATTTGATCAACGGTGCAGGCTGGCGTGCATGGGACGGTGATTTTGCATTAAGCACTTTGTATTACGCAGAGTACAGCAACAGTGGACCAGGGTCTAACACCAGCAATAGAGTGACGTGGTCTGGTTATCACGTGATTAATGCCACTGATGCAGCTAATTTTACAGTGTCGAATTTTTTGCTTGGTGATGATTGGTTACCCCAGACAGGAGTGTCGTACACCGATAACCTGATATAG 1686 0.4816 MTSKLSYSLSFFLFLLPLFHTVIVSADTVSNPATPVSPGTACQSTPDPSYCKSVLPPQNGNVYDYGRFSVKKSLSQARKFLSLVDKYLQRRSSLSATAIRALQDCRTLGELNFDFLSSSFQTVNKTTRFLPSFQADDIQTLLSAILTNQQTCLDGLKDTASAWSVRNGLILPLSNDTKLYSVSLALFNKGWVPRSKVNTMHPTKKQQGFRNGRLPLKMSSTTRAILESVSRRKLLQASVGQDVVVRDIVTVSQDGSGNFTTISDAIAAAPNKSASTDGYFLIYVTAGVYDEIVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFSSATLAVVGQGFVGVNMTIRNTAGAVKHQAVALRNGADLSTFYSCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAKVVLQSCNMYPRLPMQGQFNAITAQGRTDPNQDTGISIHNCSIRATDDLAASRGVSTYLGRPWKEYSRTVYMQTFMDDLINGAGWRAWDGDFALSTLYYAEYSNSGPGSNTSNRVTWSGYHVINATDAANFTVSNFLLGDDWLPQTGVSYTDNLI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00013 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Vium957g00013 561 Gene3D - 243 560 IPR012334 -
Vium957g00013 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Vium957g00013 561 SUPERFAMILY Pectin lyase-like 246 557 IPR011050 -
Vium957g00013 561 PANTHER PECTINESTERASE 24 550 - -
Vium957g00013 561 CDD PMEI-like_3 40 191 - -
Vium957g00013 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Vium957g00013 561 SMART PMEI_2 33 186 IPR006501 GO:0004857
Vium957g00013 561 FunFam Pectinesterase 39 189 - -
Vium957g00013 561 FunFam Pectinesterase 242 560 - -
Vium957g00013 561 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Vium957g00013 561 Pfam Pectinesterase 249 546 IPR000070 GO:0030599|GO:0042545
Vium957g00013 561 NCBIfam pectinesterase inhibitor domain 8 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00013 Vium-Chr957 70714 72762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00013 9 561 Carbohydrate Esterase AT4G02330 62.195 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00013 K01051 - gmx:100800971 1003.43