Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00008 ATGATCATTAAGCGGAGCATGAAAACTGAAATTCCAAAACGATTCAAGTCAGAAAAACGAGTGGTTTCCGAGATTCATAAGGAGAGGAGAACAAATGGGTTTTTTTCTGCTGAAGGAGTCTCTGGATCCAGTGAGGCGCCGTCCAATTCAAATTCCGTGGACTCCAATGGCACAATTGGAGACCTGCCCCCGCAACCAGAAGAAGTGTTTCGTGCCATTCAAGCCCAGTCTTCCAGAGGTCGCACCAAGAAGCTTCCTTGCAGGTTCAGTGATTCTGTTCTTTACGAACGATTAGGGTCTGATAACGGGAATGGGAATGTTTTACAAGACGTTGCTGCCATGAGTAGTGAGCGGGATTCTCCTTGTTTTCCATGTTCTGCTGTGCTAAGAGATTCCGAGTACTCCGTCAAGACTGTTAGAAAGACGGTTATTGGAGGTCGTTCTGTGTTTGTTAAAGAGAAGATTGATGCTGTGCCTGGACTAAGTACCCACGTTGAACGTGTGAATGGAAGTGTCAAAAGGAAGAGGGATGCTTGCAGATTGGATGATTTTTGTTTGGGTGATATAGTTTGGGCAAAGTGTGGGAAGACCCATCCTGCTTGGCCTGCTGTAGTCATTGATCCTTTCTTTCGAGCTCCCAAATCCGTCATAAACTGCTGTGTCCCTTCTGCACTTTGTGTTATGTTTTTTGGTTACTCCAAAAACGGGAATCGTAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCCCCTTCTGGGAATTCATGGACAGGTTCCAGGGGCAGATCAAACTGTACAAAAATAAAGCAAGTGATTTTCACAAGGCAATGGAAGAGGCAATGTTGGCCGAAGATGGCATTTTGGACTTACACTTGGAAGCTGATCAAAATTTGGTGGCTGCGGATTCCCCGGTTGACCACCGTCATTCCTATAAAGATCAGGGTACACTATCTTGTGCTGGCTGTGGTTTGGTGTTGCCATGCAAAAACATAAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGCCCTGTGTAAAGTTAATAAAATCGAAACAATATTGTGGGATTTGCAAAAAGATTTGGCATCATTCAGACGGTGGAAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTTAATTGTAAATTATCAACATCTCATGCACAGAAGTCAAAAAAGATATCAATGGAGGATAGCCAAAAACTTGTATTACCTGAAAATATTGCTGTGGTATGCAATGGCCTGGAAGGAATCTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTGTGTAGTTCTAGGAAGTATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATGGATCAGTAACCACAAGGCCCCAACGGGAATTCCCCCGCAGTTAGATCAGCAGCAAATTCTGTCCTTTTTACAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTCGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTACGGGGCAAATAATGTTCAAGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTTCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCTCTGAAACCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTCAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACGTGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACAACAACAACGAAGATGCTAATATACTGTGCAAATCACAGGGTCCCAAACCCAGATTCAGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAGTTTCGCTTCAAAATCACCCGAGGTGCTTCAGGGGATCAAGTCTGGCTTCGACAAAGAATGTAGAACTTCTTGAACCTTCAAACTCTGAAATTCATGAGATTGATCCACTCTCCGCTGCCCGAATTCGTGTGTACGAAAGGTCTTCCAATAAGAAGAATGCTGCGCCTGCAATTCACTTGCTTGGGGGGCCAAAGCTTCACTCTTTAGGTGAAATAACTCAATTGAATGGTATTAAGGATGATCAAGCTCTTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAGCCAAAGAGTTTGCTTAGGAAAATCAGGAATTTATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGACGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTACTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCTAGGATTATGTGCTTGAGTGATGAGGAGAATCGGATTGTGCTTATTGCGAAGACCAATGTTTCGGCTGGTGAAGAACTAACGTATAATTACTTGTTCGATGTAGATGAGCCAGATGAACTGAAGGTTCCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2919 0.4282 MIIKRSMKTEIPKRFKSEKRVVSEIHKERRTNGFFSAEGVSGSSEAPSNSNSVDSNGTIGDLPPQPEEVFRAIQAQSSRGRTKKLPCRFSDSVLYERLGSDNGNGNVLQDVAAMSSERDSPCFPCSAVLRDSEYSVKTVRKTVIGGRSVFVKEKIDAVPGLSTHVERVNGSVKRKRDACRLDDFCLGDIVWAKCGKTHPAWPAVVIDPFFRAPKSVINCCVPSALCVMFFGYSKNGNRRDYAWVKQGMIFPFWEFMDRFQGQIKLYKNKASDFHKAMEEAMLAEDGILDLHLEADQNLVAADSPVDHRHSYKDQGTLSCAGCGLVLPCKNIKKIKDSSCAPQHYCKPCVKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHAQKSKKISMEDSQKLVLPENIAVVCNGLEGIYIPKLHLVMCNCGLCSSRKYTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWISNHKAPTGIPPQLDQQQILSFLQEKYEPVYAKWTTERCAICRWVEDWEYNKIIICNRCQMAVHQECYGANNVQDFTSWVCRVCETSDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKMLIYCANHRVPNPDSGLVVHTPMEVFSPTVSLQNHPRCFRGSSLASTKNVELLEPSNSEIHEIDPLSAARIRVYERSSNKKNAAPAIHLLGGPKLHSLGEITQLNGIKDDQALEFSSLKERLHHLRKTESQRVCLGKSGIYGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSDEENRIVLIAKTNVSAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00008 972 MobiDBLite consensus disorder prediction 36 59 - -
Vium957g00008 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 536 591 IPR013083 -
Vium957g00008 972 CDD PHD_TCF19_like 358 408 - -
Vium957g00008 972 FunFam Histone-lysine N-methyltransferase 806 972 - -
Vium957g00008 972 SMART PWWP_4 184 253 IPR000313 -
Vium957g00008 972 FunFam Histone-lysine N-methyltransferase 591 710 - -
Vium957g00008 972 Pfam PHD-finger 554 588 - -
Vium957g00008 972 ProSiteProfiles Zinc finger PHD-type profile. 539 590 IPR019787 -
Vium957g00008 972 Gene3D SET domain 815 972 IPR046341 -
Vium957g00008 972 ProSiteProfiles Post-SET domain profile. 956 972 IPR003616 -
Vium957g00008 972 Gene3D - 178 285 - -
Vium957g00008 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 709 IPR013083 -
Vium957g00008 972 SMART PHD_3 541 588 IPR001965 -
Vium957g00008 972 SMART PHD_3 357 409 IPR001965 -
Vium957g00008 972 SMART PHD_3 652 708 IPR001965 -
Vium957g00008 972 SUPERFAMILY Tudor/PWWP/MBT 183 285 - -
Vium957g00008 972 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 414 IPR013083 -
Vium957g00008 972 SUPERFAMILY SET domain 829 968 IPR046341 -
Vium957g00008 972 CDD PHD_ATX3_4_5_like 541 587 IPR042011 -
Vium957g00008 972 ProSiteProfiles PWWP domain profile. 186 255 IPR000313 -
Vium957g00008 972 ProSitePatterns Zinc finger PHD-type signature. 542 587 IPR019786 -
Vium957g00008 972 SUPERFAMILY FYVE/PHD zinc finger 540 604 IPR011011 -
Vium957g00008 972 Pfam SET domain 841 946 IPR001214 GO:0005515
Vium957g00008 972 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 972 IPR025780 -
Vium957g00008 972 ProSiteProfiles SET domain profile. 830 947 IPR001214 GO:0005515
Vium957g00008 972 ProSiteProfiles Zinc finger PHD-type profile. 355 411 IPR019787 -
Vium957g00008 972 PANTHER PHD FINGER PROTEINS 33 951 - -
Vium957g00008 972 CDD SET_SETD1-like 819 968 - -
Vium957g00008 972 Pfam PHD-finger 357 410 IPR019787 -
Vium957g00008 972 Pfam PHD-zinc-finger like domain 595 707 - -
Vium957g00008 972 SUPERFAMILY FYVE/PHD zinc finger 354 416 IPR011011 -
Vium957g00008 972 ProSiteProfiles Extended PHD (ePHD) domain profile. 593 708 IPR034732 -
Vium957g00008 972 MobiDBLite consensus disorder prediction 32 63 - -
Vium957g00008 972 SMART set_7 830 953 IPR001214 GO:0005515
Vium957g00008 972 CDD PWWP_AtATX3-like 187 286 - -
Vium957g00008 972 SMART PostSET_3 956 972 IPR003616 -
Vium957g00008 972 Pfam PWWP domain 187 283 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00008 Vium-Chr957 33542 42850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00008 542 707 C2H2 Transcription Factor Family AT3G14740 34.286 1.87e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vium957g00008 zf-HC5HC2H_2 4.4e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00008 - - gmx:100785063 1454.5