Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00007 CTGCAAGGTTATGGTGGGCACTGCCATTCTCGTCTTCCTTCTCATAATCCTCATCATTCTCTTCAACGCCTACATCCGCTTCTGCCGCCGTCGCCGCCGTGTTCTCTTGTTCCGTTCCCTTCCCACTTTTTCCTTCTCCGCCTCGTGCACCGCTCTCTCAAGGAATGTGCGTGTGCCTGTCGGAGGTTCGCCGAGGTTGATAAAGTTCGCACACTTCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACGCGTGGTTTGCCTCTCACTCCACGTGTCCTCTGTGCCGAACACCGGCCCAACCGGCCAAGGGTTGCTCCGATAATGAACCCGGTTTGGTTCCAGTTTCCGGAGCAGAAGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTGCGTGTCCGAGAAAGACGTTGGATGTAGTGATAGAGGTGGGAGATGTGGAAAGAGGTTTGAATCCTGCAAGGAAGATGATGGATTCAGATGTTCATTGA 495 0.5354 LQGYGGHCHSRLPSHNPHHSLQRLHPLLPPSPPCSLVPFPSHFFLLRLVHRSLKECACACRRFAEVDKVRTLPNCKHGFHTHCIDAWFASHSTCPLCRTPAQPAKGCSDNEPGLVPVSGAEEGCSSSLGPPIACPRKTLDVVIEVGDVERGLNPARKMMDSDVH 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00007 164 MobiDBLite consensus disorder prediction 1 20 - -
Vium957g00007 164 Pfam Ring finger domain 55 98 IPR001841 -
Vium957g00007 164 ProSiteProfiles Zinc finger RING-type profile. 60 98 IPR001841 -
Vium957g00007 164 PANTHER RING-H2 FINGER PROTEIN ATL16 50 103 IPR044600 GO:0016567|GO:0016740
Vium957g00007 164 SUPERFAMILY RING/U-box 61 105 - -
Vium957g00007 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00007 Vium-Chr957 32015 32652 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00007 49 107 Rapid Response to Elicitors AT3G16720 49.153 3.65e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00007 - - var:108328797 225.328