Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00006 ATGACTATGGAGCCCGACATTGAATCCAAGTACACACACAACGGAAAGGTTATGGTGGGCACTGCCATTCTCCTCTTCCTTCTCATAATCTTCATCATTCTCTTCAACGCCTACGTCCGCTTCTGCCGCCGTCGGCGCCGCGCTCTCTTGTCCCATTCCCTTCTGACCACCTCCTTCCCCGAGCCCTGTCTCGATCCTTCCGTCATCAAGTCCCTTCCCACTTTTTCCTTCTCCGCGCCGTCCACCGCTCTCCAGGAATGCGCCGTGTGCCTGTCGGAGTTCGCCGATGGTGATAAAGTCCGCGTGCTCCCCAACTGTAAGCATGGTTTCCACACCCACTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCTCTGTGCCGAACTCCGGCCCAACCGGCCAAGGGTTGCTCTGACGATGAAGCCGGTTCAGTTCCCGTTTCGGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTGCGTGTCCGAGAAAGGCGTTGGATGTGGTGATAGAGGTGGGAGATCTGGAAAGAGATTTGAATCCTGCAACGGAAGATGACGGATTCAGATCCTCATTGAAGAGGTTTTGTAACGCTTAA 609 0.5534 MTMEPDIESKYTHNGKVMVGTAILLFLLIIFIILFNAYVRFCRRRRRALLSHSLLTTSFPEPCLDPSVIKSLPTFSFSAPSTALXQECAVCLSEFADGDKVRVLPNCKHGFHTHCIDAWFASHSTCPLCRTPAQPAKGCSDDEAGSVPVSEADEGCSSSLGPPIACPRKALDVVIEVGDLERDLNPATEDDGFRSSLKRFCNA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00006 203 Pfam Ring finger domain 87 130 IPR001841 -
Vium957g00006 203 FunFam E3 ubiquitin-protein ligase ATL6 54 136 - -
Vium957g00006 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Vium957g00006 203 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Vium957g00006 203 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 150 - -
Vium957g00006 203 CDD RING-H2_EL5-like 87 130 - -
Vium957g00006 203 SUPERFAMILY RING/U-box 68 137 - -
Vium957g00006 203 SMART ring_2 88 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00006 Vium-Chr957 23852 24692 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00006 11 145 Rapid Response to Elicitors AT3G16720 37.908 1.84e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00006 - - pvu:PHAVU_001G208400g 326.635