Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium957g00003 ATGGGGATCGATTTGAAGGCAGGAGGTAAGTCCAAAAAGACCAAGCGAACCGCCCCAAAATCCGATGATATTTACCTCAAGCTCCTCGTCAAGTTGTACCGTTTTCTTGTTCGGAGGACTGGGAGTAATTTCAATGCCGTCATTCTCAAGCGTCTTTTCATGAGCAAGGTCAACAAGCCTCCGCTATCCCTCTCCAGATTGATCCGTTACACCAAGGGAAAGGAGGATAAGATAGCTGTGGTCGTTGGGGCCGTGACCGATGATATTCGTGTGTACGAGGTGCCTGCTCTGAAGGTAGCAGCACTGAGGTTCACTGAAACTGCCAGAGCTAGAATTGAGAAAGTTGGCGGGGAATGTCTCACCTTTGATCAACTGGCTCTTAGAGCTCCTCTCGGCCAAAACACGGTTCTTCTTAGAGGTCCTAAGAATGCTCGCGAGGCCGTCAAGCACTTTGGACCGGCTCCTGGTGTGCCCCATAGCCACACCAAGCCCTATGTCCGTTCAAAGGGACGGAAATTTGAGCGGGCCAGAGGGAGAAGGAATAGCAGAGGCTTTAGAGTTTGA 564 0.5089 MGIDLKAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEDKIAVVVGAVTDDIRVYEVPALKVAALRFTETARARIEKVGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium957g00003 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 187 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vium957g00003 187 FunFam 60S ribosomal protein L18 1 187 - -
Vium957g00003 187 Gene3D - 1 187 - -
Vium957g00003 187 MobiDBLite consensus disorder prediction 151 187 - -
Vium957g00003 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vium957g00003 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vium957g00003 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium957g00003 Vium-Chr957 10797 12710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium957g00003 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 1.46e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium957g00003 K02883 - gmx:100306301 338.961